Chemical elements
  Nickel
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    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
      2jk8
      2kau
      2kkd
      2noo
      2nqc
      2nz6
      2o3b
      2o8q
      2o97
      2ok3
      2oq6
      2oq7
      2os0
      2os1
      2os2
      2ot7
      2ou6
      2ox0
      2p0u
      2pos
      2pr0
      2pw8
      2q4s
      2q8c
      2q8d
      2q8e
      2qe9
      2qj3
      2qjv
      2qnk
      2qq9
      2qqa
      2qqb
      2qqh
      2qyi
      2r36
      2r9z
      2rab
      2rd9
      2rj2
      2tdx
      2ubp
      2uu8
      2uuh
      2uui
      2uve
      2uvf
      2uwj
      2v24
      2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in PDB, part 7 (301-350), PDB files 2jk8 - 2v4b






Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms.
PDB files 301-350 (2jk8 - 2v4b):
  1. 2jk8 - Type IV Secretion System Effector Protein Bepa Complexed With A Pyrophosphate Moiety
  2. 2kau - The Crystal Structure of Urease From Klebsiella Aerogenes At 2.2 Angstroms Resolution
  3. 2kkd - uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin
  4. 2noo - Crystal Structure of Mutant Nika
  5. 2nqc - Crystal Structure of Ig-Like Domain 23 From Human Filamin C
  6. 2nz6 - Crystal Structure of the Ptprj Inactivating Mutant C1239S
  7. 2o3b - Crystal Structure Complex of Nuclease A (Nuca) With Intra-Cellular Inhibitor Nuia
  8. 2o8q - Crystal Structure of A Protein With A Cupin-Like Fold and Unknown Function (BXE_C0505) From Burkholderia Xenovorans LB400 At 1.55 A Resolution
  9. 2o97 - Crystal Structure of E. Coli Hu Heterodimer
  10. 2ok3 - X-Ray Structure of Human Cyclophilin J At 2.0 Angstrom
  11. 2oq6 - Crystal Structure of JMJD2A Complexed With Histone H3 Peptide Trimethylated At LYS9
  12. 2oq7 - The Crystal Structure of JMJD2A Complexed With Ni and N-Oxalylglycine
  13. 2os0 - Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes
  14. 2os1 - Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes
  15. 2os2 - Crystal Structure of JMJD2A Complexed With Histone H3 Peptide Trimethylated At LYS36
  16. 2ot7 - Crystal Structure of JMJD2A Complexed With Histone H3 Peptide Monomethylated At LYS9
  17. 2ou6 - Crystal Structure Of A Putative Metalloenzyme of the DUF664 Family (DR_1065) From Deinococcus Radiodurans At 1.80 A Resolution
  18. 2ox0 - Crystal Structure of JMJD2A Complexed With Histone H3 Peptide Dimethylated At LYS9
  19. 2p0u - Crystal Structure of Marchantia Polymorpha Stilbenecarboxylate Synthase 2 (STCS2)
  20. 2pos - Crystal Structure of Sylvaticin, A New Secreted Protein From Pythium Sylvaticum
  21. 2pr0 - Crystal Structure of Sylvaticin, A New Secreted Protein From Pythium Sylvaticum
  22. 2pw8 - Crystal Structure of Sulfo-Hirudin Complexed to Thrombin
  23. 2q4s - Ensemble Refinement Of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
  24. 2q8c - Crystal Structure of JMJD2A in Ternary Complex With An Histone H3K9ME3 Peptide and 2-Oxoglutarate
  25. 2q8d - Crystal Structure of JMJ2D2A in Ternary Complex With Histone H3-K36ME2 and Succinate
  26. 2q8e - Specificity and Mechanism of JMJD2A, A Trimethyllysine- Specific Histone Demethylase
  27. 2qe9 - Crystal Structure of A Putative Metal-Dependent Hydrolase (Yiza, BSU10800) From Bacillus Subtilis At 1.90 A Resolution
  28. 2qj3 - Mycobacterium Tuberculosis Fabd
  29. 2qjv - Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 At 1.90 A Resolution
  30. 2qnk - Crystal Structure of Human 3-Hydroxyanthranilate 3,4-Dioxygenase
  31. 2qq9 - Crystal Structure of Dtxr(D6A C102D) Complexed With Nickel(II)
  32. 2qqa - Crystal Structure of Dtxr(E9A C102D) Complexed With Nickel(II)
  33. 2qqb - Crystal Structure of Dtxr(M10A C102D) Complexed With Nickel(II)
  34. 2qqh - Structure Of C8A-Macpf Reveals Mechanism of Membrane Attack in Complement Immune Defense
  35. 2qyi - Crystal Structure of A Binary Complex Between An Engineered Trypsin Inhibitor and Bovine Trypsin
  36. 2r36 - Crystal Structure of Ni Human Arg-Insulin
  37. 2r9z - Glutathione Amide Reductase From Chromatium Gracile
  38. 2rab - Structure of Glutathione Amide Reductase From Chromatium Gracile in Complex With Nad
  39. 2rd9 - Crystal Structure of A Putative Yfit-Like Metal-Dependent Hydrolase (BH0186) From Bacillus Halodurans C-125 At 2.30 A Resolution
  40. 2rj2 - Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase At 1.7 Resolution
  41. 2tdx - Diphtheria Tox Repressor (C102D Mutant) Complexed With Nickel
  42. 2ubp - Structure of Native Urease From Bacillus Pasteurii
  43. 2uu8 - X-Ray Structure of Ni, Ca Concanavalin A At Ultra-High Resolution (0.94A)
  44. 2uuh - Crystal Structure of Human Leukotriene C4 Synthase in Complex With Substrate Glutathione
  45. 2uui - Crystal Structure of Human Leukotriene C4 Synthase
  46. 2uve - Structure of Yersinia Enterocolitica Family 28 Exopolygalacturonase
  47. 2uvf - Structure of Yersinia Enterocolitica Family 28 Exopolygalacturonase in Complex With Digalaturonic Acid
  48. 2uwj - Structure of the Heterotrimeric Complex Which Regulates Type III Secretion Needle Formation
  49. 2v24 - Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4
  50. 2v4b - Crystal Structure of Human Adamts-1 Catalytic Domain and Cysteine-Rich Domain (Apo-Form)


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Nickel coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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