Chemical elements
  Nickel
    History
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    Energy
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    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
      2vbq
      2vco
      2vd7
      2vtc
      2vuw
      2vy3
      2w2i
      2w37
      2w3t
      2w3u
      2w94
      2w95
      2wcr
      2wja
      2wmy
      2wny
      2wpn
      2wqm
      2wqn
      2wvf
      2wwj
      2wwu
      2x27
      2xau
      2xdv
      2xio
      2xjo
      2xml
      2xwj
      2xxz
      2y1h
      2yiv
      2z8y
      2zpl
      3a1f
      3a3v
      3al6
      3b2y
      3b51
      3b52
      3b53
      3bem
      3bix
      3bj4
      3bjd
      3bkh
      3bkv
      3bq8
      3bvc
      3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in PDB, part 8 (351-400), PDB files 2vbq - 3c2q






Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms.
PDB files 351-400 (2vbq - 3c2q):
  1. 2vbq - Structure of Aac(6')-Iy in Complex With Bisubstrate Analog Coa-S-Monomethyl-Acetylneamine.
  2. 2vco - Crystal Structure of the Fimbrial Adhesin Fimh in Complex With Its High-Mannose Epitope
  3. 2vd7 - Crystal Structure of JMJD2A Complexed With Inhibitor Pyridine-2,4-Dicarboxylic Acid
  4. 2vtc - The Structure of A Glycoside Hydrolase Family 61 Member, CEL61B From the Hypocrea Jecorina.
  5. 2vuw - Structure of Human Haspin Kinase Domain
  6. 2vy3 - Type IV Secretion System Effector Protein Bepa
  7. 2w2i - Crystal Structure of the Human 2-Oxoglutarate Oxygenase LOC390245
  8. 2w37 - Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii
  9. 2w3t - Chloro Complex Of the Ni-Form of E.Coli Deformylase
  10. 2w3u - Formate Complex Of the Ni-Form of E.Coli Deformylase
  11. 2w94 - Native Structure of the Discoidin I From Dictyostelium Discoideum At 1.8 Angstrom Resolution
  12. 2w95 - Structure of the Discoidin I From Dictyostelium Discoideum in Complex With Galnac At 1.75 Angstrom Resolution
  13. 2wcr - Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori At PH8
  14. 2wja - Crystal Structure of the Tyrosine Phosphatase Wzb From Escherichia Coli K30 in Complex With Phosphate.
  15. 2wmy - Crystal Structure of the Tyrosine Phosphatase Wzb From Escherichia Coli K30 in Complex With Sulphate.
  16. 2wny - Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus
  17. 2wpn - Structure of the Oxidised, As-Isolated Nifese Hydrogenase From D. Vulgaris Hildenborough
  18. 2wqm - Structure of Apo Human NEK7
  19. 2wqn - Structure of Adp-Bound Human NEK7
  20. 2wvf - Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function
  21. 2wwj - Structure of JMJD2A Complexed With Inhibitor 10A
  22. 2wwu - Crystal Structure Of the Catalytic Domain of Phd Finger Protein 8
  23. 2x27 - Crystal Structure of the Outer Membrane Protein Oprg From Pseudomonas Aeruginosa
  24. 2xau - Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex With Adp
  25. 2xdv - Crystal Structure Of the Catalytic Domain of FLJ14393
  26. 2xio - Structure of Putative Deoxyribonuclease TATDN1 Isoform A
  27. 2xjo - Crystal Structure of Streptococcus Suis Dpr With Nickel
  28. 2xml - Crystal Structure of Human JMJD2C Catalytic Domain
  29. 2xwj - Crystal Structure of Complement C3B in Complex With Factor B
  30. 2xxz - Crystal Structure of the Human JMJD3 Jumonji Domain
  31. 2y1h - Crystal Structure of the Human Tatd-Domain Protein 3 (TATDN3)
  32. 2yiv - Ni,Fe-Codh With N-Butylisocyanate State
  33. 2z8y - Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica
  34. 2zpl - Crystal Structure Analysis of Pdz Domain A
  35. 3a1f - The Crystal Structure Of Nadph Binding Domain of GP91(Phox)
  36. 3a3v - Crystal Structure of Reducing-End-Xylose Releasing Exo-Oligoxylanase Y198F Mutant
  37. 3al6 - Crystal Structure of Human TYW5
  38. 3b2y - Crystal Structure of A Putative Metallopeptidase (SDEN_2526) From Shewanella Denitrificans OS217 At 1.74 A Resolution
  39. 3b51 - Ni,Fe-Codh-600 Mv State
  40. 3b52 - Ni,Fe-Codh-600 Mv State + CO2
  41. 3b53 - Ni,Fe-Codh-320 Mv State
  42. 3bem - Crystal Structure of Putative Nitroreductase Ydfn (2632848) From Bacillus Subtilis At 1.65 A Resolution
  43. 3bix - Crystal Structure Of the Extracellular Esterase Domain of Neuroligin-1
  44. 3bj4 - The KCNQ1 (KV7.1) C-Terminus, A Multi-Tiered Scaffold For Subunit Assembly and Protein Interaction
  45. 3bjd - Crystal Structure of Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase From Pseudomonas Aeruginosa
  46. 3bkh - Crystal Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144
  47. 3bkv - X-Ray Structure of the Bacteriophage Phikz Lytic Transglycosylase, GP144, in Complex With Chitotetraose, (Nag)4
  48. 3bq8 - Crystal Structure of the E.Coli Phoq Sensor Domain
  49. 3bvc - Crystal Structure of Uncharacterized Protein ISM_01780 From Roseovarius Nubinhibens Ism
  50. 3c2q - Crystal Structure of Conserved Putative Lor/Sdh Protein From Methanococcus Maripaludis S2


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Nickel coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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