Chemical elements
  Nickel
    History
    Occurrence
    Isotopes
    Energy
    Production
    Preparation
    Application
    Catalyst
    Physical Properties
    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
      3c6c
      3c7j
      3cc8
      3cf4
      3cgm
      3cj2
      3cj3
      3cj4
      3csx
      3cu2
      3cur
      3cus
      3d34
      3d82
      3d9b
      3de9
      3di5
      3dkq
      3dp8
      3ds9
      3dse
      3dve
      3e3u
      3e7v
      3egj
      3esk
      3exx
      3eyy
      3f0a
      3ffo
      3fh3
      3fmd
      3fms
      3foo
      3fop
      3fpu
      3fwv
      3g4x
      3g4z
      3g50
      3g86
      3gb7
      3gc8
      3glx
      3gor
      3grf
      3gw7
      3h0n
      3h3x
      3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in PDB, part 9 (401-450), PDB files 3c6c - 3h85






Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms.
PDB files 401-450 (3c6c - 3h85):
  1. 3c6c - Crystal Structure of A Putative 3-Keto-5-Aminohexanoate Cleavage Enzyme (REUT_C6226) From Ralstonia Eutropha JMP134 At 1.72 A Resolution
  2. 3c7j - Crystal Structure of Transcriptional Regulator (Gntr Family Member) From Pseudomonas Syringae Pv. Tomato Str. DC3000
  3. 3cc8 - Crystal Structure of A Putative Methyltransferase (BCE_1332) From Bacillus Cereus Atcc 10987 At 1.64 A Resolution
  4. 3cf4 - Structure Of The Codh Component of the M. Barkeri Acds Complex
  5. 3cgm - Crystal Structure of Thermophilic Slyd
  6. 3cj2 - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex With Optimized Small Molecule Fragments
  7. 3cj3 - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex With Optimized Small Molecule Fragments
  8. 3cj4 - Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex With Optimized Small Molecule Fragments
  9. 3csx - Structural Characterization Of A Protein in The DUF683 Family- Crystal Structure of CCE_0567 From the Cyanobacterium Cyanothece 51142.
  10. 3cu2 - Crystal Structure of Ribulose-5-Phosphate 3-Epimerase (YP_718263.1) From Haemophilus Somnus 129PT At 1.91 A Resolution
  11. 3cur - Structure Of A Double Methionine Mutant of Ni-Fe Hydrogenase
  12. 3cus - Structure Of A Double Ile/Phe Mutant of Ni-Fe Hydrogenase Refined At 2.2 Angstrom Resolution
  13. 3d34 - Structure Of the F-Spondin Domain of Mindin
  14. 3d82 - Crystal Structure of A Cupin-2 Domain Containing Protein (SFRI_3543) From Shewanella Frigidimarina Ncimb 400 At 2.05 A Resolution
  15. 3d9b - Symmetric Structure of E. Coli Acrb
  16. 3de9 - Crystal Structure of A Trimeric Cytochrome CB562 Assembly Induced By Nickel Coordination
  17. 3di5 - Crystal Structure of A Dinb-Like Protein (BCE_4655) From Bacillus Cereus Atcc 10987 At 2.01 A Resolution
  18. 3dkq - Crystal Structure of Putative Oxygenase (YP_001051978.1) From Shewanella Baltica OS155 At 2.26 A Resolution
  19. 3dp8 - Structural Characterization of A Putative Endogenous Metal Chelator in the Periplasmic Nickel Transporter Nika (Nickel Butane-1,2,4- Tricarboxylate Form)
  20. 3ds9 - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
  21. 3dse - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
  22. 3dve - Crystal Structure of CA2+/Cam-CAV2.2 Iq Domain Complex
  23. 3e3u - Crystal Structure of Mycobacterium Tuberculosis Peptide Deformylase in Complex With Inhibitor
  24. 3e7v - Crystal Structure of Human Haspin With A Pyrazolo-Pyrimidine Ligand
  25. 3egj - N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.
  26. 3esk - Structure of Hop TPR2A Domain in Complex With the Non-Cognate HSC70 Peptide Ligand
  27. 3exx - Structure of the T6 Human Insulin Derivative With Nickel At 1.35 A Resolution
  28. 3eyy - Structural Basis For the Specialization of Nur, A Nickel- Specific Fur Homologue, in Metal Sensing and Dna Recognition
  29. 3f0a - Structure of A Putative N-Acetyltransferase (TA0374) in Complex With Acetyl-Coa From Thermoplasma Acidophilum
  30. 3ffo - F17B-G Lectin Domain With Bound Glcnac(BETA1-2)Man
  31. 3fh3 - Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne
  32. 3fmd - Crystal Structure of Human Haspin With An Isoquinoline Ligand
  33. 3fms - Crystal Structure of TM0439, A Gntr Transcriptional Regulator
  34. 3foo - A Triangular Cytochrome B562 Superstructure Mediated By Ni Coordination - Monoclinic Form
  35. 3fop - A Triangular Cytochrome B562 Superstructure Mediated By Ni Coordination - Hexagonal Form
  36. 3fpu - The Crystallographic Structure of the Complex Between Evasin-1 and CCL3
  37. 3fwv - Crystal Structure of A Redesigned Tpr Protein, T-Mod(Vmy), in Complex With Meevf Peptide
  38. 3g4x - Crystal Structure of Nisod Y9F Mutant
  39. 3g4z - Crystal Structure of Nisod Y9F Mutant At 1.9 A
  40. 3g50 - Crystal Structure of Nisod D3A Mutant At 1.9 A
  41. 3g86 - Hepatitis C Virus Polymerase NS5B (Bk 1-570) With Thiazine Inhibitor
  42. 3gb7 - Potassium Channel Kcsa-Fab Complex in Li+
  43. 3gc8 - The Structure of P38BETA C162S in Complex With A Dihydroquinazolinone
  44. 3glx - Crystal Structure Analysis of the Dtxr(E175K) Complexed With Ni(II)
  45. 3gor - Crystal Structure of Putative Metal-Dependent Hydrolase APC36150
  46. 3grf - X-Ray Structure of Ornithine Transcarbamoylase From Giardia Lamblia
  47. 3gw7 - Crystal Structure of A Metal-Dependent Phosphohydrolase With Conserved Hd Domain (Yedj) From Escherichia Coli in Complex With Nickel Ions. Northeast Structural Genomics Consortium Target ER63
  48. 3h0n - Crystal Structure of A DUF1470 Family Protein (JANN_2411) From Jannaschia Sp. CCS1 At 1.45 A Resolution
  49. 3h3x - Structure Of the V74M Large Subunit Mutant of Ni-Fe Hydrogenase in An Oxidized State
  50. 3h85 - Molecular Basis For The Association of Pipki Gamma-P90 With the Clathrin Adaptor Ap-2


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Nickel coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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