Chemical elements
  Nickel
    History
    Occurrence
    Isotopes
    Energy
    Production
    Preparation
    Application
    Catalyst
    Physical Properties
    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
      3hdp
      3hg9
      3hpx
      3ht1
      3hth
      3htj
      3htn
      3hwp
      3hxt
      3hy3
      3hy4
      3hy6
      3i01
      3i04
      3i0o
      3i0q
      3i2b
      3i39
      3iar
      3ib3
      3idq
      3iga
      3iht
      3ii2
      3ii3
      3iii
      3ile
      3imp
      3inc
      3iu8
      3iu9
      3iv8
      3iwf
      3k0h
      3k0k
      3k15
      3k16
      3k2i
      3k2o
      3k4z
      3k6l
      3k9u
      3kbn
      3kbr
      3kbv
      3kbw
      3kco
      3kkc
      3kv4
      3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in PDB, part 10 (451-500), PDB files 3hdp - 3kvb






Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms.
PDB files 451-500 (3hdp - 3kvb):
  1. 3hdp - Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum
  2. 3hg9 - Crystal Structure of Putative Pilm Protein From Pseudomonas Aeruginosa 2192
  3. 3hpx - Crystal Structure of Mycobacterium Tuberculosis Leua Active Site Domain 1-425 (Truncation Mutant Delta:426-644)
  4. 3ht1 - 1.2A Structure of the Polyketide Cyclase Remf From Streptomyces Resistomycificus
  5. 3hth - Crystal Structure of Multidrug Binding Protein Ebrr Complexed With Proflavin
  6. 3htj - Crystal Structure of Multidrug Binding Protein Ebrr Complexed With Ethidium
  7. 3htn - Crystal Structure of A Putative Dna Binding Protein (BT_1116) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.50 A Resolution
  8. 3hwp - Crystal Structure and Computational Analyses Provide Insights Into the Catalytic Mechanism of 2, 4-Diacetylphloroglucinol Hydrolase Phlg From Pseudomonas Fluorescens
  9. 3hxt - Structure of Human Mthfs
  10. 3hy3 - Structure of Human Mthfs With 10-Formyltetrahydrofolate
  11. 3hy4 - Structure of Human Mthfs With N5-Iminium Phosphate
  12. 3hy6 - Structure of Human Mthfs With Adp
  13. 3i01 - Native Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl- Coa Synthase From Moorella Thermoacetica, Water-Bound C-Cluster.
  14. 3i04 - Cyanide-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase From Moorella Thermoacetica, Cyanide-Bound C-Cluster
  15. 3i0o - Crystal Structure of Spectinomycin Phosphotransferase, Aph(9)-Ia, in Complex With Adp and Spectinomcyin
  16. 3i0q - Crystal Structure Of the Amp-Bound Complex of Spectinomycin Phosphotransferase, Aph(9)-Ia
  17. 3i2b - The Crystal Structure of Human 6 Pyruvoyl Tetrahydrobiopterin Synthase
  18. 3i39 - Ni,Fe-Codh-320 Mv+Cn State
  19. 3iar - The Crystal Structure of Human Adenosine Deaminase
  20. 3ib3 - Crystal Structure of SACOL2612 - Coce/Nond Family Hydrolase From Staphylococcus Aureus
  21. 3idq - Crystal Structure of S. Cerevisiae GET3 At 3.7 Angstrom Resolution
  22. 3iga - Potassium Channel Kcsa-Fab Complex in Li+ and K+
  23. 3iht - Crystal Structure of S-Adenosyl-L-Methionine Methyl Transferase (YP_165822.1) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution
  24. 3ii2 - Structure of ORF157 From Acidianus Filamentous Virus 1
  25. 3ii3 - Structure of ORF157 From Acidianus Filamentous Virus 1
  26. 3iii - 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus
  27. 3ile - Crystal Structure Of ORF157-E86A of Acidianus Filamentous Virus 1
  28. 3imp - New Crystal Form Of the C-Terminal Domain of Helicobacter Pylori Motb (Residues 125-256)
  29. 3inc - Crystal Structure of Human Insulin With Ni+2 Complex
  30. 3iu8 - M. Tuberculosis Methionine Aminopeptidase With Ni Inhibitor T03
  31. 3iu9 - M. Tuberculosis Methionine Aminopeptidase With Ni Inhibitor T07
  32. 3iv8 - N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae Complexed With Fructose 6-Phosphate
  33. 3iwf - The Crystal Structure Of the N-Terminal Domain of A Rpir Transcriptional Regulator From Staphylococcus Epidermidis to 1.4A
  34. 3k0h - The Crystal Structure of BRCA1 Brct in Complex With A Minimal Recognition Tetrapeptide With An Amidated C-Terminus
  35. 3k0k - Crystal Structure of BRCA1 Brct in Complex With A Minimal Recognition Tetrapeptide With A Free Carboxy C-Terminus.
  36. 3k15 - Crystal Structure of BRCA1 Brct D1840T in Complex With A Minimal Recognition Tetrapeptide With An Amidated C-Terminus
  37. 3k16 - Crystal Structure of BRCA1 Brct D1840T in Complex With A Minimal Recognition Tetrapeptide With A Free Carboxy C-Terminus
  38. 3k2i - Human Acyl-Coenzyme A Thioesterase 4
  39. 3k2o - Structure of An Oxygenase
  40. 3k4z - Crystal Structure of the Cellulosomal CBM4 From Clostridium Thermocellum Cellulase Cbha
  41. 3k6l - The Structure of E.Coli Peptide Deformylase (Pdf) in Complex With Peptidomimetic Ligand BB2827
  42. 3k9u - Crystal Structure of Paia Acetyltransferase (TA0374) From Thermoplasma Acidophilum
  43. 3kbn - Room Temperature Structure of D-Xylose Isomerase In Complex With 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
  44. 3kbr - The Crystal Structure of Cyclohexadienyl Dehydratase Precursor From Pseudomonas Aeruginosa PA01
  45. 3kbv - Room Temperature Structure of D-Xylose Isomerase in Complex With 2NI(2+) Co-Factors
  46. 3kbw - Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex With Ni(2+) and Mg(2+) Co-Factors
  47. 3kco - Room Temperature Neutron Structure of D-Xylose Isomerase In Complex With Two NI2+ Cations and D12-D-Glucose in the Linear Form (Refined Jointly With X-Ray Structure 3KBN)
  48. 3kkc - The Crystal Structure of Tetr Transcriptional Regulator From Streptococcus Agalactiae 2603V
  49. 3kv4 - Structure of PHF8 in Complex With Histone H3
  50. 3kvb - Structure of KIAA1718 Jumonji Domain in Complex With N- Oxalylglycine


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Nickel coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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