Chemical elements
  Nickel
    History
    Occurrence
    Isotopes
    Energy
    Production
    Preparation
    Application
    Catalyst
    Physical Properties
    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
      3l1m
      3l6p
      3l6t
      3la4
      3lag
      3le0
      3leg
      3lei
      3lek
      3leo
      3lgh
      3lho
      3lmw
      3lop
      3lxy
      3m1v
      3m2r
      3m2u
      3m2v
      3m30
      3m32
      3mgq
      3mib
      3mic
      3mid
      3mie
      3mif
      3mig
      3mih
      3mlj
      3mlk
      3mll
      3mmu
      3ms5
      3myr
      3n0q
      3n0w
      3nbk
      3ne7
      3nf3
      3njy
      3nmj
      3no4
      3nv1
      3nv2
      3nv3
      3nv4
      3ny0
      3nzz
      3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in PDB, part 11 (501-550), PDB files 3l1m - 3o00






Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms.
PDB files 501-550 (3l1m - 3o00):
  1. 3l1m - Crystal Structure Of A Ni-Directed Dimer of Cytochrome CB562 With A Quinolate-Histidine Hybrid Coordination Motif
  2. 3l6p - Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease
  3. 3l6t - Crystal Structure Of An N-Terminal Mutant of the Plasmid PCU1 Trai Relaxase Domain
  4. 3la4 - Crystal Structure of the First Plant Urease From Jack Bean (Canavalia Ensiformis)
  5. 3lag - The Crystal Structure of A Functionally Unknown Protein RPA4178 From Rhodopseudomonas Palustris CGA009
  6. 3le0 - Lectin Domain of Lectinolysin Complexed With Glycerol
  7. 3leg - Lectin Domain of Lectinolysin Complexed With Lewis Y Antigen
  8. 3lei - Lectin Domain of Lectinolysin Complexed With Fucose
  9. 3lek - Lectin Domain of Lectinolysin Complexed With Lewis B Antigen
  10. 3leo - Structure of Human Leukotriene C4 Synthase Mutant R31Q in Complex With Glutathione
  11. 3lgh - Crystal Structure of Nikr From Helicobacter Pylori With Variable Ni Site Coordination
  12. 3lho - Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution
  13. 3lmw - Crystal Structure Of Iota-Carrageenase Family GH82 From A. Fortis in Absence of Chloride Ions
  14. 3lop - Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum
  15. 3lxy - Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92
  16. 3m1v - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  17. 3m2r - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  18. 3m2u - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  19. 3m2v - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  20. 3m30 - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  21. 3m32 - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
  22. 3mgq - Binding of Nickel Ions to the Nucleosome Core Particle
  23. 3mib - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Nitrite
  24. 3mic - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Azide Obtained By Co-Crystallization
  25. 3mid - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Azide Obtained By Soaking (100MM NAN3)
  26. 3mie - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Azide Obtained By Soaking (50MM NAN3)
  27. 3mif - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
  28. 3mig - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Nitrite, Obtained in the Presence of Substrate
  29. 3mih - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Azide, Obtained in the Presence of Substrate
  30. 3mlj - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
  31. 3mlk - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Nitrite
  32. 3mll - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Azide
  33. 3mmu - Crystal Structure of Endoglucanase CEL5A From the Hyperthermophilic Thermotoga Maritima
  34. 3ms5 - Crystal Structure of Human Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (BBOX1)
  35. 3myr - Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
  36. 3n0q - Crystal Structure of A Putative Aromatic-Ring Hydroxylating Dioxygenase (TM1040_3219) From Silicibacter Sp. TM1040 At 1.80 A Resolution
  37. 3n0w - Crystal Structure of A Branched Chain Amino Acid Abc Transporter Periplasmic Ligand-Binding Protein (BXE_C0949) From Burkholderia Xenovorans LB400 At 1.88 A Resolution
  38. 3nbk - Phosphopantetheine Adenylyltransferase From Mycobacterium Tuberculosis in Complex With 4'-Phosphopantetheine
  39. 3ne7 - Crystal Structure of Paia N-Acetyltransferase From Thermoplasma Acidophilum in Complex With Coenzyme A
  40. 3nf3 - Crystal Structure of Bont/A Lc With Jth-Nb-7239 Peptide
  41. 3njy - Crystal Structure of JMJD2A Complexed With 5-Carboxy-8- Hydroxyquinoline
  42. 3nmj - Crystal Structure of A Nickel Mediated Dimer For the Phenanthroline- Modified Cytochrome CB562 Variant, Mbp-PHEN2
  43. 3no4 - Crystal Structure of A Creatinine Amidohydrolase (NPUN_F1913) From Nostoc Punctiforme Pcc 73102 At 2.00 A Resolution
  44. 3nv1 - Crystal Structure of Human Galectin-9 C-Terminal Crd
  45. 3nv2 - Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex With N-Acetyllactosamine
  46. 3nv3 - Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex With Biantennary Oligosaccharide
  47. 3nv4 - Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex With Sialyllactose
  48. 3ny0 - Crystal Structure of Uree From Helicobacter Pylori (NI2+ Bound Form)
  49. 3nzz - Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd
  50. 3o00 - Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Nickel coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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