Nickel in PDB 6l7g: Metallo Beta-Lactamase Fold Protein (Camp Bound)
Protein crystallography data
The structure of Metallo Beta-Lactamase Fold Protein (Camp Bound), PDB code: 6l7g
was solved by
K.-Y.Lee,
D.-G.Kim,
B.-J.Lee,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.85 /
1.70
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.734,
121.521,
187.256,
90,
90,
90
|
|
R / Rfree (%)
|
17.7 /
20.8
|
Other elements in 6l7g:
The structure of Metallo Beta-Lactamase Fold Protein (Camp Bound) also contains other interesting chemical elements:
Nickel Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Nickel atom in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
(pdb code 6l7g). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 12 binding sites of Nickel where determined in the
Metallo Beta-Lactamase Fold Protein (Camp Bound), PDB code: 6l7g:
Jump to Nickel binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Nickel binding site 1 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 1 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ni303
b:25.1
occ:0.50
|
ZN
|
A:ZN305
|
0.0
|
25.7
|
0.5
|
|
O
|
A:HOH409
|
2.0
|
25.2
|
1.0
|
|
NE2
|
A:HIS110
|
2.1
|
18.3
|
1.0
|
|
ND1
|
A:HIS50
|
2.2
|
22.2
|
1.0
|
|
NE2
|
A:HIS48
|
2.2
|
19.1
|
1.0
|
|
OD2
|
A:ASP144
|
2.4
|
22.2
|
1.0
|
|
O
|
A:HOH534
|
2.6
|
37.5
|
1.0
|
|
CD2
|
A:HIS110
|
3.0
|
19.6
|
1.0
|
|
CE1
|
A:HIS50
|
3.0
|
22.7
|
1.0
|
|
CE1
|
A:HIS110
|
3.1
|
18.4
|
1.0
|
|
CD2
|
A:HIS48
|
3.1
|
18.1
|
1.0
|
|
CG
|
A:HIS50
|
3.2
|
23.1
|
1.0
|
|
NI
|
A:NI304
|
3.2
|
25.3
|
0.5
|
|
ZN
|
A:ZN306
|
3.2
|
25.9
|
0.5
|
|
CE1
|
A:HIS48
|
3.3
|
18.9
|
1.0
|
|
CG
|
A:ASP144
|
3.4
|
22.4
|
1.0
|
|
CB
|
A:HIS50
|
3.6
|
22.0
|
1.0
|
|
O
|
A:HOH516
|
3.8
|
28.9
|
1.0
|
|
CB
|
A:ASP144
|
3.8
|
18.7
|
1.0
|
|
NE2
|
A:HIS53
|
4.0
|
21.0
|
1.0
|
|
CD2
|
A:HIS53
|
4.1
|
24.1
|
1.0
|
|
O
|
C:HOH510
|
4.1
|
25.2
|
1.0
|
|
CG
|
A:HIS110
|
4.2
|
18.2
|
1.0
|
|
ND1
|
A:HIS110
|
4.2
|
19.1
|
1.0
|
|
NE2
|
A:HIS50
|
4.2
|
21.4
|
1.0
|
|
CG
|
A:HIS48
|
4.3
|
17.4
|
1.0
|
|
CD2
|
A:HIS50
|
4.3
|
22.1
|
1.0
|
|
ND1
|
A:HIS48
|
4.4
|
17.9
|
1.0
|
|
OD1
|
A:ASP52
|
4.4
|
24.8
|
1.0
|
|
OD1
|
A:ASP144
|
4.5
|
18.7
|
1.0
|
|
OD2
|
A:ASP52
|
4.7
|
23.9
|
1.0
|
|
O
|
A:SER111
|
4.8
|
19.7
|
1.0
|
|
CE1
|
A:HIS53
|
4.9
|
23.6
|
1.0
|
|
CA
|
A:HIS50
|
5.0
|
21.0
|
1.0
|
|
CG
|
A:ASP52
|
5.0
|
25.3
|
1.0
|
|
Nickel binding site 2 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 2 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ni304
b:25.3
occ:0.50
|
ZN
|
A:ZN306
|
0.0
|
25.9
|
0.5
|
|
O
|
A:HOH409
|
2.0
|
25.2
|
1.0
|
|
NE2
|
A:HIS195
|
2.2
|
21.9
|
1.0
|
|
NE2
|
A:HIS53
|
2.2
|
21.0
|
1.0
|
|
OD2
|
A:ASP144
|
2.2
|
22.2
|
1.0
|
|
OD2
|
A:ASP52
|
2.2
|
23.9
|
1.0
|
|
O
|
A:HOH516
|
2.4
|
28.9
|
1.0
|
|
CG
|
A:ASP144
|
3.0
|
22.4
|
1.0
|
|
CD2
|
A:HIS195
|
3.1
|
21.4
|
1.0
|
|
CD2
|
A:HIS53
|
3.1
|
24.1
|
1.0
|
|
CG
|
A:ASP52
|
3.2
|
25.3
|
1.0
|
|
CE1
|
A:HIS195
|
3.2
|
23.3
|
1.0
|
|
NI
|
A:NI303
|
3.2
|
25.1
|
0.5
|
|
OD1
|
A:ASP144
|
3.2
|
18.7
|
1.0
|
|
ZN
|
A:ZN305
|
3.2
|
25.7
|
0.5
|
|
CE1
|
A:HIS53
|
3.3
|
23.6
|
1.0
|
|
OD1
|
A:ASP52
|
3.5
|
24.8
|
1.0
|
|
O
|
A:HOH534
|
3.5
|
37.5
|
1.0
|
|
O
|
A:HOH535
|
3.9
|
37.8
|
1.0
|
|
OE1
|
A:GLN8
|
4.1
|
26.8
|
1.0
|
|
NE2
|
A:HIS48
|
4.2
|
19.1
|
1.0
|
|
CG
|
A:HIS195
|
4.2
|
19.8
|
1.0
|
|
ND1
|
A:HIS195
|
4.3
|
22.2
|
1.0
|
|
CG
|
A:HIS53
|
4.3
|
22.2
|
1.0
|
|
CE1
|
A:HIS48
|
4.3
|
18.9
|
1.0
|
|
ND1
|
A:HIS53
|
4.4
|
24.6
|
1.0
|
|
CB
|
A:ASP144
|
4.4
|
18.7
|
1.0
|
|
CB
|
A:ASP52
|
4.5
|
25.8
|
1.0
|
|
NE2
|
A:HIS110
|
4.7
|
18.3
|
1.0
|
|
CD
|
A:GLN8
|
4.8
|
23.6
|
1.0
|
|
Nickel binding site 3 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 3 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ni304
b:22.7
occ:0.50
|
ZN
|
B:ZN306
|
0.0
|
23.7
|
0.5
|
|
O
|
B:HOH459
|
1.8
|
23.1
|
1.0
|
|
NE2
|
B:HIS48
|
2.1
|
16.7
|
1.0
|
|
NE2
|
B:HIS110
|
2.1
|
17.5
|
1.0
|
|
ND1
|
B:HIS50
|
2.1
|
19.2
|
1.0
|
|
OD2
|
B:ASP144
|
2.4
|
18.6
|
1.0
|
|
O
|
B:HOH556
|
2.8
|
38.0
|
1.0
|
|
CD2
|
B:HIS110
|
3.0
|
16.6
|
1.0
|
|
CE1
|
B:HIS50
|
3.1
|
19.6
|
1.0
|
|
CD2
|
B:HIS48
|
3.1
|
17.8
|
1.0
|
|
CE1
|
B:HIS48
|
3.1
|
19.0
|
1.0
|
|
CE1
|
B:HIS110
|
3.1
|
17.7
|
1.0
|
|
CG
|
B:HIS50
|
3.2
|
19.9
|
1.0
|
|
NI
|
B:NI305
|
3.3
|
22.9
|
0.5
|
|
ZN
|
B:ZN307
|
3.3
|
23.9
|
0.5
|
|
CG
|
B:ASP144
|
3.5
|
21.0
|
1.0
|
|
CB
|
B:HIS50
|
3.5
|
21.5
|
1.0
|
|
O
|
B:HOH525
|
3.8
|
32.7
|
1.0
|
|
CB
|
B:ASP144
|
3.9
|
16.8
|
1.0
|
|
O
|
A:HOH523
|
4.0
|
21.8
|
1.0
|
|
NE2
|
B:HIS53
|
4.0
|
17.9
|
1.0
|
|
CD2
|
B:HIS53
|
4.1
|
20.4
|
1.0
|
|
CG
|
B:HIS110
|
4.2
|
16.9
|
1.0
|
|
NE2
|
B:HIS50
|
4.2
|
19.5
|
1.0
|
|
ND1
|
B:HIS110
|
4.2
|
16.8
|
1.0
|
|
CG
|
B:HIS48
|
4.2
|
16.5
|
1.0
|
|
ND1
|
B:HIS48
|
4.2
|
18.3
|
1.0
|
|
CD2
|
B:HIS50
|
4.3
|
19.9
|
1.0
|
|
OD1
|
B:ASP52
|
4.4
|
21.7
|
1.0
|
|
OD1
|
B:ASP144
|
4.6
|
21.4
|
1.0
|
|
OD2
|
B:ASP52
|
4.7
|
21.8
|
1.0
|
|
O
|
B:SER111
|
4.8
|
17.6
|
1.0
|
|
CE1
|
B:HIS53
|
4.9
|
19.8
|
1.0
|
|
CA
|
B:HIS50
|
4.9
|
21.1
|
1.0
|
|
CG
|
B:ASP52
|
5.0
|
23.5
|
1.0
|
|
Nickel binding site 4 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 4 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ni305
b:22.9
occ:0.50
|
ZN
|
B:ZN307
|
0.0
|
23.9
|
0.5
|
|
O
|
B:HOH459
|
2.1
|
23.1
|
1.0
|
|
NE2
|
B:HIS53
|
2.1
|
17.9
|
1.0
|
|
OD2
|
B:ASP144
|
2.1
|
18.6
|
1.0
|
|
NE2
|
B:HIS195
|
2.2
|
18.5
|
1.0
|
|
OD2
|
B:ASP52
|
2.2
|
21.8
|
1.0
|
|
O
|
B:HOH525
|
2.3
|
32.7
|
1.0
|
|
CG
|
B:ASP144
|
3.0
|
21.0
|
1.0
|
|
CD2
|
B:HIS53
|
3.1
|
20.4
|
1.0
|
|
CD2
|
B:HIS195
|
3.1
|
20.1
|
1.0
|
|
CE1
|
B:HIS53
|
3.2
|
19.8
|
1.0
|
|
CE1
|
B:HIS195
|
3.2
|
17.5
|
1.0
|
|
CG
|
B:ASP52
|
3.2
|
23.5
|
1.0
|
|
NI
|
B:NI304
|
3.3
|
22.7
|
0.5
|
|
OD1
|
B:ASP144
|
3.3
|
21.4
|
1.0
|
|
ZN
|
B:ZN306
|
3.3
|
23.7
|
0.5
|
|
OD1
|
B:ASP52
|
3.5
|
21.7
|
1.0
|
|
O
|
B:HOH556
|
3.7
|
38.0
|
1.0
|
|
OE1
|
B:GLN8
|
4.1
|
26.2
|
1.0
|
|
NE2
|
B:HIS48
|
4.2
|
16.7
|
1.0
|
|
CE1
|
B:HIS48
|
4.2
|
19.0
|
1.0
|
|
ND1
|
B:HIS195
|
4.2
|
19.7
|
1.0
|
|
CG
|
B:HIS53
|
4.2
|
20.2
|
1.0
|
|
CG
|
B:HIS195
|
4.2
|
18.9
|
1.0
|
|
ND1
|
B:HIS53
|
4.3
|
20.3
|
1.0
|
|
CB
|
B:ASP144
|
4.4
|
16.8
|
1.0
|
|
CB
|
B:ASP52
|
4.5
|
22.2
|
1.0
|
|
NE2
|
B:HIS110
|
4.7
|
17.5
|
1.0
|
|
CD
|
B:GLN8
|
4.8
|
20.7
|
1.0
|
|
Nickel binding site 5 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 5 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 5 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ni303
b:26.5
occ:0.50
|
ZN
|
C:ZN305
|
0.0
|
26.8
|
0.5
|
|
O
|
C:HOH406
|
2.0
|
22.2
|
1.0
|
|
NE2
|
C:HIS110
|
2.1
|
18.1
|
1.0
|
|
ND1
|
C:HIS50
|
2.2
|
22.9
|
1.0
|
|
NE2
|
C:HIS48
|
2.2
|
19.5
|
1.0
|
|
OD2
|
C:ASP144
|
2.4
|
22.0
|
1.0
|
|
O
|
C:HOH515
|
2.8
|
35.1
|
1.0
|
|
CD2
|
C:HIS110
|
3.0
|
20.0
|
1.0
|
|
CD2
|
C:HIS48
|
3.0
|
18.9
|
1.0
|
|
CE1
|
C:HIS110
|
3.1
|
19.0
|
1.0
|
|
CE1
|
C:HIS50
|
3.1
|
25.0
|
1.0
|
|
CG
|
C:HIS50
|
3.2
|
25.6
|
1.0
|
|
NI
|
C:NI304
|
3.2
|
27.4
|
0.5
|
|
ZN
|
C:ZN306
|
3.2
|
27.4
|
0.5
|
|
CE1
|
C:HIS48
|
3.3
|
19.2
|
1.0
|
|
CG
|
C:ASP144
|
3.5
|
23.7
|
1.0
|
|
CB
|
C:HIS50
|
3.5
|
25.6
|
1.0
|
|
O
|
C:HOH513
|
3.7
|
38.0
|
1.0
|
|
CB
|
C:ASP144
|
3.9
|
18.8
|
1.0
|
|
NE2
|
C:HIS53
|
4.1
|
23.7
|
1.0
|
|
CG
|
C:HIS110
|
4.1
|
17.7
|
1.0
|
|
CD2
|
C:HIS53
|
4.1
|
25.7
|
1.0
|
|
O
|
B:HOH493
|
4.2
|
22.3
|
1.0
|
|
ND1
|
C:HIS110
|
4.2
|
16.3
|
1.0
|
|
CG
|
C:HIS48
|
4.2
|
17.2
|
1.0
|
|
NE2
|
C:HIS50
|
4.3
|
24.2
|
1.0
|
|
OD1
|
C:ASP52
|
4.3
|
26.7
|
1.0
|
|
CD2
|
C:HIS50
|
4.3
|
26.6
|
1.0
|
|
ND1
|
C:HIS48
|
4.4
|
19.2
|
1.0
|
|
OD1
|
C:ASP144
|
4.6
|
24.0
|
1.0
|
|
OD2
|
C:ASP52
|
4.7
|
28.3
|
1.0
|
|
O
|
C:SER111
|
4.8
|
21.8
|
1.0
|
|
CG
|
C:ASP52
|
4.9
|
30.6
|
1.0
|
|
CA
|
C:HIS50
|
4.9
|
24.6
|
1.0
|
|
Nickel binding site 6 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 6 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 6 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ni304
b:27.4
occ:0.50
|
ZN
|
C:ZN306
|
0.0
|
27.4
|
0.5
|
|
O
|
C:HOH406
|
1.9
|
22.2
|
1.0
|
|
OD2
|
C:ASP144
|
2.1
|
22.0
|
1.0
|
|
NE2
|
C:HIS195
|
2.2
|
22.2
|
1.0
|
|
NE2
|
C:HIS53
|
2.3
|
23.7
|
1.0
|
|
OD2
|
C:ASP52
|
2.3
|
28.3
|
1.0
|
|
O
|
C:HOH513
|
2.6
|
38.0
|
1.0
|
|
CG
|
C:ASP144
|
3.0
|
23.7
|
1.0
|
|
CD2
|
C:HIS195
|
3.1
|
22.9
|
1.0
|
|
CD2
|
C:HIS53
|
3.1
|
25.7
|
1.0
|
|
CE1
|
C:HIS195
|
3.2
|
22.1
|
1.0
|
|
CG
|
C:ASP52
|
3.2
|
30.6
|
1.0
|
|
NI
|
C:NI303
|
3.2
|
26.5
|
0.5
|
|
ZN
|
C:ZN305
|
3.2
|
26.8
|
0.5
|
|
OD1
|
C:ASP144
|
3.3
|
24.0
|
1.0
|
|
CE1
|
C:HIS53
|
3.3
|
25.1
|
1.0
|
|
OD1
|
C:ASP52
|
3.5
|
26.7
|
1.0
|
|
O
|
C:HOH515
|
3.9
|
35.1
|
1.0
|
|
OE1
|
C:GLN8
|
4.1
|
29.1
|
1.0
|
|
NE2
|
C:HIS48
|
4.1
|
19.5
|
1.0
|
|
CG
|
C:HIS195
|
4.3
|
19.9
|
1.0
|
|
ND1
|
C:HIS195
|
4.3
|
21.9
|
1.0
|
|
CE1
|
C:HIS48
|
4.3
|
19.2
|
1.0
|
|
CG
|
C:HIS53
|
4.3
|
22.9
|
1.0
|
|
ND1
|
C:HIS53
|
4.4
|
24.1
|
1.0
|
|
CB
|
C:ASP144
|
4.4
|
18.8
|
1.0
|
|
CB
|
C:ASP52
|
4.5
|
26.7
|
1.0
|
|
NE2
|
C:HIS110
|
4.6
|
18.1
|
1.0
|
|
CD
|
C:GLN8
|
4.7
|
24.7
|
1.0
|
|
CE1
|
C:HIS110
|
5.0
|
19.0
|
1.0
|
|
CG
|
C:GLN8
|
5.0
|
22.8
|
1.0
|
|
Nickel binding site 7 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 7 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 7 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ni304
b:22.2
occ:0.50
|
ZN
|
D:ZN306
|
0.0
|
23.2
|
0.5
|
|
O
|
D:HOH416
|
2.0
|
24.8
|
1.0
|
|
NE2
|
D:HIS110
|
2.1
|
17.2
|
1.0
|
|
NE2
|
D:HIS48
|
2.1
|
16.3
|
1.0
|
|
ND1
|
D:HIS50
|
2.2
|
19.6
|
1.0
|
|
OD2
|
D:ASP144
|
2.5
|
19.2
|
1.0
|
|
O
|
D:HOH536
|
2.6
|
35.4
|
1.0
|
|
CD2
|
D:HIS110
|
3.0
|
15.7
|
1.0
|
|
CD2
|
D:HIS48
|
3.0
|
17.1
|
1.0
|
|
CE1
|
D:HIS50
|
3.1
|
18.5
|
1.0
|
|
CE1
|
D:HIS110
|
3.2
|
17.1
|
1.0
|
|
CG
|
D:HIS50
|
3.2
|
18.2
|
1.0
|
|
CE1
|
D:HIS48
|
3.2
|
17.6
|
1.0
|
|
NI
|
D:NI305
|
3.3
|
23.3
|
0.5
|
|
ZN
|
D:ZN307
|
3.3
|
24.2
|
0.5
|
|
CG
|
D:ASP144
|
3.5
|
19.1
|
1.0
|
|
CB
|
D:HIS50
|
3.5
|
19.4
|
1.0
|
|
CB
|
D:ASP144
|
3.8
|
17.3
|
1.0
|
|
O
|
D:HOH520
|
3.9
|
29.5
|
1.0
|
|
O
|
F:HOH510
|
3.9
|
24.2
|
1.0
|
|
NE2
|
D:HIS53
|
4.0
|
19.9
|
1.0
|
|
CD2
|
D:HIS53
|
4.1
|
20.3
|
1.0
|
|
CG
|
D:HIS110
|
4.2
|
16.1
|
1.0
|
|
CG
|
D:HIS48
|
4.2
|
17.0
|
1.0
|
|
ND1
|
D:HIS110
|
4.2
|
17.0
|
1.0
|
|
NE2
|
D:HIS50
|
4.3
|
19.0
|
1.0
|
|
ND1
|
D:HIS48
|
4.3
|
17.1
|
1.0
|
|
CD2
|
D:HIS50
|
4.3
|
20.3
|
1.0
|
|
OD1
|
D:ASP52
|
4.4
|
21.2
|
1.0
|
|
OD1
|
D:ASP144
|
4.5
|
22.2
|
1.0
|
|
OD2
|
D:ASP52
|
4.7
|
21.4
|
1.0
|
|
O
|
D:SER111
|
4.8
|
17.1
|
1.0
|
|
CA
|
D:HIS50
|
4.9
|
20.1
|
1.0
|
|
CE1
|
D:HIS53
|
5.0
|
22.1
|
1.0
|
|
CG
|
D:ASP52
|
5.0
|
21.8
|
1.0
|
|
Nickel binding site 8 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 8 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 8 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ni305
b:23.3
occ:0.50
|
ZN
|
D:ZN307
|
0.0
|
24.2
|
0.5
|
|
O
|
D:HOH416
|
2.0
|
24.8
|
1.0
|
|
NE2
|
D:HIS195
|
2.1
|
19.5
|
1.0
|
|
NE2
|
D:HIS53
|
2.1
|
19.9
|
1.0
|
|
OD2
|
D:ASP144
|
2.2
|
19.2
|
1.0
|
|
OD2
|
D:ASP52
|
2.2
|
21.4
|
1.0
|
|
O
|
D:HOH520
|
2.4
|
29.5
|
1.0
|
|
CD2
|
D:HIS53
|
3.0
|
20.3
|
1.0
|
|
CG
|
D:ASP144
|
3.0
|
19.1
|
1.0
|
|
CD2
|
D:HIS195
|
3.1
|
18.4
|
1.0
|
|
CE1
|
D:HIS195
|
3.1
|
19.3
|
1.0
|
|
CG
|
D:ASP52
|
3.1
|
21.8
|
1.0
|
|
CE1
|
D:HIS53
|
3.2
|
22.1
|
1.0
|
|
NI
|
D:NI304
|
3.3
|
22.2
|
0.5
|
|
ZN
|
D:ZN306
|
3.3
|
23.2
|
0.5
|
|
OD1
|
D:ASP144
|
3.3
|
22.2
|
1.0
|
|
OD1
|
D:ASP52
|
3.5
|
21.2
|
1.0
|
|
O
|
D:HOH536
|
3.5
|
35.4
|
1.0
|
|
OE1
|
D:GLN8
|
4.0
|
25.9
|
1.0
|
|
O
|
D:HOH544
|
4.1
|
35.7
|
1.0
|
|
NE2
|
D:HIS48
|
4.2
|
16.3
|
1.0
|
|
CG
|
D:HIS53
|
4.2
|
22.1
|
1.0
|
|
ND1
|
D:HIS195
|
4.2
|
19.9
|
1.0
|
|
CG
|
D:HIS195
|
4.2
|
18.0
|
1.0
|
|
ND1
|
D:HIS53
|
4.3
|
19.4
|
1.0
|
|
CE1
|
D:HIS48
|
4.3
|
17.6
|
1.0
|
|
CB
|
D:ASP144
|
4.4
|
17.3
|
1.0
|
|
CB
|
D:ASP52
|
4.5
|
21.5
|
1.0
|
|
NE2
|
D:HIS110
|
4.7
|
17.2
|
1.0
|
|
CD
|
D:GLN8
|
4.8
|
21.2
|
1.0
|
|
Nickel binding site 9 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 9 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 9 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ni303
b:23.3
occ:0.50
|
ZN
|
E:ZN305
|
0.0
|
24.1
|
0.5
|
|
O
|
E:HOH411
|
2.0
|
24.4
|
1.0
|
|
NE2
|
E:HIS110
|
2.0
|
17.7
|
1.0
|
|
ND1
|
E:HIS50
|
2.2
|
19.8
|
1.0
|
|
NE2
|
E:HIS48
|
2.2
|
18.1
|
1.0
|
|
OD2
|
E:ASP144
|
2.4
|
19.5
|
1.0
|
|
O
|
E:HOH517
|
2.6
|
36.9
|
1.0
|
|
CD2
|
E:HIS110
|
2.9
|
16.4
|
1.0
|
|
CD2
|
E:HIS48
|
3.1
|
17.6
|
1.0
|
|
CE1
|
E:HIS110
|
3.1
|
17.3
|
1.0
|
|
CE1
|
E:HIS50
|
3.1
|
17.5
|
1.0
|
|
NI
|
E:NI304
|
3.2
|
23.1
|
0.5
|
|
ZN
|
E:ZN306
|
3.2
|
24.3
|
0.5
|
|
CG
|
E:HIS50
|
3.2
|
20.6
|
1.0
|
|
CE1
|
E:HIS48
|
3.3
|
18.8
|
1.0
|
|
CG
|
E:ASP144
|
3.5
|
18.0
|
1.0
|
|
CB
|
E:HIS50
|
3.6
|
23.2
|
1.0
|
|
O
|
E:HOH514
|
3.9
|
37.1
|
1.0
|
|
CB
|
E:ASP144
|
3.9
|
15.3
|
1.0
|
|
NE2
|
E:HIS53
|
4.0
|
20.3
|
1.0
|
|
CD2
|
E:HIS53
|
4.1
|
23.3
|
1.0
|
|
CG
|
E:HIS110
|
4.1
|
16.4
|
1.0
|
|
ND1
|
E:HIS110
|
4.1
|
15.6
|
1.0
|
|
O
|
D:HOH488
|
4.3
|
19.3
|
1.0
|
|
CG
|
E:HIS48
|
4.3
|
16.0
|
1.0
|
|
NE2
|
E:HIS50
|
4.3
|
18.0
|
1.0
|
|
CD2
|
E:HIS50
|
4.3
|
18.2
|
1.0
|
|
OD1
|
E:ASP52
|
4.3
|
22.6
|
1.0
|
|
ND1
|
E:HIS48
|
4.4
|
18.0
|
1.0
|
|
OD1
|
E:ASP144
|
4.6
|
20.4
|
1.0
|
|
OD2
|
E:ASP52
|
4.6
|
22.1
|
1.0
|
|
O
|
E:SER111
|
4.8
|
18.4
|
1.0
|
|
CG
|
E:ASP52
|
4.9
|
23.9
|
1.0
|
|
CE1
|
E:HIS53
|
5.0
|
20.9
|
1.0
|
|
CA
|
E:HIS50
|
5.0
|
21.4
|
1.0
|
|
Nickel binding site 10 out
of 12 in 6l7g
Go back to
Nickel Binding Sites List in 6l7g
Nickel binding site 10 out
of 12 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
 Mono view
 Stereo pair view
|
|
A full contact list of Nickel with other atoms in the Ni binding
site number 10 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ni304
b:23.1
occ:0.50
|
ZN
|
E:ZN306
|
0.0
|
24.3
|
0.5
|
|
O
|
E:HOH411
|
2.0
|
24.4
|
1.0
|
|
OD2
|
E:ASP52
|
2.2
|
22.1
|
1.0
|
|
NE2
|
E:HIS53
|
2.2
|
20.3
|
1.0
|
|
CE1
|
E:HIS195
|
2.2
|
17.7
|
1.0
|
|
OD2
|
E:ASP144
|
2.2
|
19.5
|
1.0
|
|
O
|
E:HOH514
|
2.6
|
37.1
|
1.0
|
|
CD2
|
E:HIS53
|
3.0
|
23.3
|
1.0
|
|
CG
|
E:ASP144
|
3.1
|
18.0
|
1.0
|
|
CG
|
E:ASP52
|
3.1
|
23.9
|
1.0
|
|
NE2
|
E:HIS195
|
3.1
|
21.7
|
1.0
|
|
ND1
|
E:HIS195
|
3.1
|
22.5
|
1.0
|
|
NI
|
E:NI303
|
3.2
|
23.3
|
0.5
|
|
ZN
|
E:ZN305
|
3.2
|
24.1
|
0.5
|
|
CE1
|
E:HIS53
|
3.3
|
20.9
|
1.0
|
|
OD1
|
E:ASP144
|
3.3
|
20.4
|
1.0
|
|
OD1
|
E:ASP52
|
3.5
|
22.6
|
1.0
|
|
O
|
E:HOH517
|
3.8
|
36.9
|
1.0
|
|
OE1
|
E:GLN8
|
4.1
|
23.9
|
1.0
|
|
NE2
|
E:HIS48
|
4.1
|
18.1
|
1.0
|
|
CG
|
E:HIS53
|
4.2
|
22.0
|
1.0
|
|
CD2
|
E:HIS195
|
4.3
|
17.5
|
1.0
|
|
CE1
|
E:HIS48
|
4.3
|
18.8
|
1.0
|
|
CG
|
E:HIS195
|
4.3
|
17.9
|
1.0
|
|
ND1
|
E:HIS53
|
4.3
|
22.9
|
1.0
|
|
CB
|
E:ASP144
|
4.4
|
15.3
|
1.0
|
|
CB
|
E:ASP52
|
4.4
|
23.6
|
1.0
|
|
NE2
|
E:HIS110
|
4.6
|
17.7
|
1.0
|
|
CD
|
E:GLN8
|
4.8
|
22.6
|
1.0
|
|
CG
|
E:GLN8
|
5.0
|
21.8
|
1.0
|
|
CE1
|
E:HIS110
|
5.0
|
17.3
|
1.0
|
|
Reference:
K.-Y.Lee,
D.-G.Kim,
B.-J.Lee.
Metallo Beta-Lactamase Fold Protein To Be Published.
Page generated: Wed Mar 3 15:40:17 2021
|
