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Nickel in PDB 9ant: Antennapedia Homeodomain-Dna Complex

Protein crystallography data

The structure of Antennapedia Homeodomain-Dna Complex, PDB code: 9ant was solved by E.Fraenkel, C.O.Pabo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group P 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.050, 77.750, 94.420, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 23.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Antennapedia Homeodomain-Dna Complex (pdb code 9ant). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Antennapedia Homeodomain-Dna Complex, PDB code: 9ant:

Nickel binding site 1 out of 1 in 9ant

Go back to Nickel Binding Sites List in 9ant
Nickel binding site 1 out of 1 in the Antennapedia Homeodomain-Dna Complex


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni601

b:51.5
occ:1.00
ND2 B:ASN60 2.4 74.9 1.0
OD1 B:ASN60 2.6 73.5 1.0
CG B:ASN60 2.7 69.9 1.0
CB B:ASN60 4.1 66.3 1.0
O B:LYS58 4.2 69.9 1.0
O B:LYS57 4.6 62.0 1.0
N B:ASN60 4.9 65.3 1.0
C B:LYS58 5.0 66.8 1.0

Reference:

E.Fraenkel, C.O.Pabo. Comparison of X-Ray and uc(Nmr) Structures For the Antennapedia Homeodomain-Dna Complex. Nat.Struct.Biol. V. 5 692 1998.
ISSN: ISSN 1072-8368
PubMed: 9699632
Page generated: Wed Dec 16 02:00:37 2020

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