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Nickel in PDB 1bxi: Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9

Protein crystallography data

The structure of Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9, PDB code: 1bxi was solved by U.C.Kuhlmann, C.Kleanthous, R.James, G.R.Moore, A.M.Hemmings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.850, 51.960, 87.590, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 31.5

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9 (pdb code 1bxi). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9, PDB code: 1bxi:

Nickel binding site 1 out of 1 in 1bxi

Go back to Nickel Binding Sites List in 1bxi
Nickel binding site 1 out of 1 in the Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Escherichia Coli Colicin E9 Dnase Domain with Its Cognate Immunity Protein IM9 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:26.9
occ:1.00
NE2 B:HIS127 2.1 25.1 1.0
ND1 B:HIS102 2.1 18.8 1.0
O3 B:PO4403 2.2 20.7 1.0
CE1 B:HIS102 3.1 20.4 1.0
CD2 B:HIS127 3.1 23.2 1.0
CE1 B:HIS127 3.1 24.1 1.0
CG B:HIS102 3.2 21.7 1.0
CE1 B:HIS131 3.4 79.9 1.0
P B:PO4403 3.5 24.0 1.0
CB B:HIS102 3.5 20.2 1.0
O4 B:PO4403 3.6 21.2 1.0
CA B:HIS102 3.8 19.1 1.0
N B:HIS103 3.8 17.6 1.0
ND1 B:HIS131 4.0 79.4 1.0
O1 B:PO4403 4.2 26.5 1.0
ND1 B:HIS127 4.2 23.5 1.0
NE2 B:HIS102 4.2 18.5 1.0
O B:HIS103 4.2 18.7 1.0
CG B:HIS127 4.2 23.5 1.0
C B:HIS102 4.3 21.1 1.0
CD2 B:HIS102 4.3 18.1 1.0
NE2 B:HIS131 4.5 79.2 1.0
O2 B:PO4403 4.5 23.0 1.0
C B:HIS103 4.9 20.2 1.0
CA B:HIS103 4.9 19.6 1.0
O B:HOH414 5.0 29.6 1.0

Reference:

U.C.Kuhlmann, U.C.Kuhlmann, C.Kleanthous, R.James, G.R.Moore, A.M.Hemmings. N/A N/A.
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