Atomistry » Nickel » PDB 1a5n-1fwb » 1cc1
Atomistry »
  Nickel »
    PDB 1a5n-1fwb »
      1cc1 »

Nickel in PDB 1cc1: Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum

Enzymatic activity of Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum

All present enzymatic activity of Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum:
1.18.99.1;

Protein crystallography data

The structure of Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum, PDB code: 1cc1 was solved by E.Garcin, X.Vernede, E.C.Hatchikian, A.Volbeda, M.Frey, J.C.Fontecilla-Camps, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.390, 63.700, 99.580, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 24.8

Other elements in 1cc1:

The structure of Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum also contains other interesting chemical elements:

Iron (Fe) 14 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum (pdb code 1cc1). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum, PDB code: 1cc1:

Nickel binding site 1 out of 1 in 1cc1

Go back to Nickel Binding Sites List in 1cc1
Nickel binding site 1 out of 1 in the Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Reduced, Active Form of the Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ni500

b:33.9
occ:1.00
SG L:CYS70 2.3 28.1 1.0
SG L:CYS73 2.3 22.5 1.0
SE L:SEC492 2.5 45.5 1.0
FE L:FCO499 2.5 21.6 1.0
SG L:CYS495 2.6 21.9 1.0
CB L:CYS70 2.9 22.4 1.0
C2 L:FCO499 3.4 23.7 1.0
CB L:CYS73 3.5 18.1 1.0
CB L:SEC492 3.5 28.4 1.0
C1 L:FCO499 3.6 22.3 1.0
N L:CYS73 3.8 19.7 1.0
CB L:CYS495 4.0 19.3 1.0
C3 L:FCO499 4.2 29.0 1.0
CA L:CYS73 4.2 18.4 1.0
CA L:CYS70 4.4 20.4 1.0
N2 L:FCO499 4.4 20.7 1.0
CB L:VAL72 4.5 21.1 1.0
NH1 L:ARG425 4.5 27.7 1.0
N1 L:FCO499 4.5 16.7 1.0
CD L:ARG425 4.7 23.3 1.0
C L:VAL72 4.8 20.7 1.0
C L:CYS70 4.9 20.2 1.0
C L:CYS73 4.9 19.8 1.0
N L:CYS495 4.9 22.0 1.0
CA L:SEC492 4.9 23.6 1.0
N L:VAL72 4.9 20.7 1.0
CA L:CYS495 4.9 20.8 1.0
CZ L:ARG425 5.0 27.8 1.0
NE L:ARG425 5.0 25.9 1.0
CA L:VAL72 5.0 20.2 1.0
NE2 L:HIS77 5.0 17.5 1.0

Reference:

E.Garcin, X.Vernede, E.C.Hatchikian, A.Volbeda, M.Frey, J.C.Fontecilla-Camps. The Crystal Structure of A Reduced [Nifese] Hydrogenase Provides An Image of the Activated Catalytic Center Structure Fold.Des. V. 7 557 1999.
ISSN: ISSN 0969-2126
PubMed: 10378275
DOI: 10.1016/S0969-2126(99)80072-0
Page generated: Wed Dec 16 01:11:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy