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Nickel in PDB 1e42: BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2

Protein crystallography data

The structure of BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2, PDB code: 1e42 was solved by D.J.Owen, P.R.Evans, H.T.Mcmahon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.42 / 1.7
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.040, 124.590, 67.640, 90.00, 124.18, 90.00
R / Rfree (%) 19.6 / 24.6

Other elements in 1e42:

The structure of BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2 also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Chlorine (Cl) 4 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2 (pdb code 1e42). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2, PDB code: 1e42:

Nickel binding site 1 out of 1 in 1e42

Go back to Nickel Binding Sites List in 1e42
Nickel binding site 1 out of 1 in the BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of BETA2-Adaptin Appendage Domain, From Clathrin Adaptor AP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni970

b:38.5
occ:0.50
O A:HOH2148 2.1 31.8 0.5
O A:HOH2096 2.1 20.7 0.5
O B:HOH2049 2.1 32.8 0.5
O B:HOH2043 2.1 31.5 0.5
O A:HOH2097 2.1 30.2 0.5
NE2 B:HIS735 2.2 23.0 1.0
CD2 B:HIS735 3.1 26.2 1.0
CE1 B:HIS735 3.2 29.5 1.0
O A:PHE753 3.8 24.0 1.0
O B:HOH2062 3.8 54.3 1.0
O A:LEU770 4.1 31.5 1.0
O B:HOH2063 4.3 41.0 1.0
ND1 B:HIS735 4.3 26.6 1.0
CG B:HIS735 4.3 23.2 1.0
O B:HOH2057 4.6 40.9 1.0
O B:GLN733 4.6 39.0 1.0
CB A:PRO769 4.6 22.0 1.0
O A:HOH2060 4.7 37.0 1.0
O A:HOH2239 4.8 65.5 1.0
C A:PHE753 5.0 23.3 1.0

Reference:

D.J.Owen, Y.Vallis, B.M.F.Pearse, H.T.Mcmahon, P.R.Evans. The Structure and Function of the BETA2-Adaptin Appendage Domain Embo J. V. 19 4216 2000.
ISSN: ISSN 0261-4189
PubMed: 10944104
DOI: 10.1093/EMBOJ/19.16.4216
Page generated: Wed Dec 16 01:11:28 2020

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