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Nickel in PDB 1e4w: Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment

Protein crystallography data

The structure of Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment, PDB code: 1e4w was solved by M.Hahn, D.Winkler, R.Misselwitz, H.Wessner, K.Welfle, G.Zahn, J.Schneider-Mergener, W.Hoehne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.220, 94.350, 121.790, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 26.9

Other elements in 1e4w:

The structure of Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment (pdb code 1e4w). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment, PDB code: 1e4w:

Nickel binding site 1 out of 1 in 1e4w

Go back to Nickel Binding Sites List in 1e4w
Nickel binding site 1 out of 1 in the Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crossreactive Binding of A Circularized Peptide to An Anti-Tgfalpha Antibody Fab-Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ni901

b:35.9
occ:1.00
NE2 L:HIS189 2.5 41.4 1.0
CD2 L:HIS189 3.2 42.2 1.0
CE1 L:HIS189 3.6 41.9 1.0
O L:HOH2201 4.1 37.7 1.0
O L:HOH2163 4.2 38.9 1.0
CG L:HIS189 4.4 42.0 1.0
O L:HOH2165 4.5 36.1 1.0
ND1 L:HIS189 4.5 42.0 1.0

Reference:

M.Hahn, D.Winkler, K.Welfle, R.Misselwitz, H.Welfle, H.Wessner, G.Zahn, C.Scholz, M.Seifert, R.Harkins, J.Schneider-Mergener, W.Hoehne. Cross-Reactive Binding of Cyclic Peptides to An Anti-Tgf Alpha Antibody Fab Fragment: An X-Ray Structural and Thermodynamic Analysis J.Mol.Biol. V. 314 293 2001.
ISSN: ISSN 0022-2836
PubMed: 11718562
DOI: 10.1006/JMBI.2001.5135
Page generated: Wed Dec 16 01:11:28 2020

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