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  Nickel
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    PDB 1a5n-1g2a
      1a5n
      1a5o
      1b9m
      1b9n
      1bs6
      1bs7
      1bxi
      1cc1
      1ddn
      1e0o
      1e20
      1e3d
      1e42
      1e4w
      1e6v
      1e6y
      1e9y
      1e9z
      1ef8
      1eje
      1ejr
      1ejs
      1ejt
      1eju
      1ejv
      1ejw
      1ejx
      1ek0
      1elr
      1elw
      1em0
      1f5t
      1f9z
      1fcp
      1fi1
      1fn3
      1frf
      1frv
      1fwa
      1fwb
      1fwc
      1fwd
      1fwe
      1fwf
      1fwg
      1fwh
      1fwi
      1fwj
      1g27
      1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Klebsiella Aerogenes Urease, C319A Variant At pH 9.4 (pdb 1fwd)






The binding sites of Nickel atom in the structure of Klebsiella Aerogenes Urease, C319A Variant At pH 9.4 (pdb code 1fwd). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 1fwd structure was solved by M.A.PEARSON, P.A.KARPLUS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-2.0
Space groupI213
a (A)170.800
b (A)170.800
c (A)170.800
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)16.9
Rfree (%)n/a


Nickel Binding Sites:

Nickel binding site 1 out of 2 in 1fwd


Nickel binding site 1 out of 2 in 1fwd
Click to enlarge
stereopicture of Nickel binding site 1 out of 2 in 1fwd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1fwd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His134, C: Kcx217, C: His219, C: His246, C: His272, C: Gly277, C: Gly278, C: Asp360, C: Ni575, C: Hoh720, C: Hoh805, C: Hoh806, C: Hoh807,

conact list:


AtomAtomDistance (A)
NiNE2 C:His1344.48
NiCE1 C:His1344.40
NiOQ1 C:Kcx2172.06
NiCX C:Kcx2173.10
NiCE C:Kcx2174.76
NiOQ2 C:Kcx2173.42
NiNZ C:Kcx2174.27
NiNE2 C:His2193.62
NiCD2 C:His2194.09
NiCE1 C:His2194.50
NiNE2 C:His2464.12
NiCB C:His2463.66
NiND1 C:His2462.16
NiCD2 C:His2464.25
NiCE1 C:His2462.98
NiCG C:His2463.22
NiCA C:His2464.85
NiNE2 C:His2722.29
NiND1 C:His2724.36
NiCD2 C:His2723.14
NiCE1 C:His2723.32
NiCG C:His2724.32
NiO C:Gly2773.26
NiC C:Gly2774.29
NiCA C:Gly2784.91
NiOD2 C:Asp3604.71
NiNI C:Ni5753.77
NiO C:Hoh7203.82
NiO C:Hoh8052.08
NiO C:Hoh8062.06
NiO C:Hoh8073.65

interactive model:


Nickel binding site 2 out of 2 in 1fwd


Nickel binding site 2 out of 2 in 1fwd
Click to enlarge
stereopicture of Nickel binding site 2 out of 2 in 1fwd
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Nickel in the PDB 1fwd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His134, C: His136, C: Ala167, C: Thr169, C: Kcx217, C: Asp360, C: Ala363, C: Ni574, C: Hoh720, C: Hoh799, C: Hoh805, C: Hoh806, C: Hoh807,

conact list:


AtomAtomDistance (A)
NiNE2 C:His1342.28
NiND1 C:His1344.37
NiCD2 C:His1343.15
NiCE1 C:His1343.31
NiCG C:His1344.33
NiNE2 C:His1362.15
NiND1 C:His1364.26
NiCD2 C:His1363.08
NiCE1 C:His1363.17
NiCG C:His1364.25
NiO C:Ala1674.55
NiCG2 C:Thr1694.13
NiOQ1 C:Kcx2173.61
NiCX C:Kcx2173.19
NiOQ2 C:Kcx2172.13
NiNZ C:Kcx2174.27
NiCB C:Asp3604.27
NiOD2 C:Asp3603.40
NiOD1 C:Asp3602.10
NiCG C:Asp3603.02
NiCA C:Asp3604.54
NiO C:Ala3634.42
NiCB C:Ala3634.46
NiNI C:Ni5743.77
NiO C:Hoh7204.37
NiO C:Hoh7994.92
NiO C:Hoh8052.01
NiO C:Hoh8063.34
NiO C:Hoh8072.10

interactive model:




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