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Nickel in PDB 1iae: Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity

Enzymatic activity of Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity

All present enzymatic activity of Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity:
3.4.24.21;

Protein crystallography data

The structure of Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity, PDB code: 1iae was solved by F.Grams, W.Stoecker, W.Bode, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.83
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.890, 61.890, 98.550, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / n/a

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity (pdb code 1iae). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity, PDB code: 1iae:

Nickel binding site 1 out of 1 in 1iae

Go back to Nickel Binding Sites List in 1iae
Nickel binding site 1 out of 1 in the Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni999

b:12.4
occ:1.00
 NE2 A:HIS92 2.1 5.0 1.0
NE2 A:HIS102 2.1 7.0 1.0
NE2 A:HIS96 2.2 5.9 1.0
O A:HOH600 2.2 15.0 1.0
OH A:TYR149 2.3 8.2 1.0
O A:HOH300 2.3 10.5 1.0
CE1 A:HIS102 3.0 10.3 1.0
CD2 A:HIS92 3.1 6.1 1.0
CD2 A:HIS96 3.1 2.7 1.0
CE1 A:HIS92 3.1 5.8 1.0
CD2 A:HIS102 3.1 3.7 1.0
CZ A:TYR149 3.2 10.4 1.0
CE1 A:HIS96 3.3 2.2 1.0
CE1 A:TYR149 3.9 9.5 1.0
O A:HOH357 3.9 18.7 1.0
O A:HOH328 4.0 22.3 1.0
CE2 A:TYR149 4.1 7.9 1.0
ND1 A:HIS102 4.2 11.9 1.0
O A:HOH330 4.2 22.6 1.0
ND1 A:HIS92 4.2 8.7 1.0
CG A:HIS92 4.2 2.0 1.0
CG A:HIS102 4.3 14.4 1.0
CG A:HIS96 4.3 8.7 1.0
OE1 A:GLU93 4.3 14.0 1.0
ND1 A:HIS96 4.4 6.2 1.0
O A:HOH402 4.7 47.9 1.0
OE2 A:GLU93 4.8 11.4 1.0
O A:HOH601 4.9 26.3 1.0
CE A:MET147 5.0 3.2 1.0
CD A:GLU93 5.0 14.5 1.0

Reference:

F.X.Gomis-Ruth, F.Grams, I.Yiallouros, H.Nar, U.Kusthardt, R.Zwilling, W.Bode, W.Stocker. Crystal Structures, Spectroscopic Features, and Catalytic Properties of Cobalt(II), Copper(II), Nickel(II), and Mercury(II) Derivatives of the Zinc Endopeptidase Astacin. A Correlation of Structure and Proteolytic Activity. J.Biol.Chem. V. 269 17111 1994.
ISSN: ISSN 0021-9258
PubMed: 8006015
Page generated: Wed Oct 9 14:57:31 2024

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