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Nickel in PDB 1j6p: Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution

Protein crystallography data

The structure of Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution, PDB code: 1j6p was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.61 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.782, 113.782, 81.305, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 20.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution (pdb code 1j6p). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution, PDB code: 1j6p:

Nickel binding site 1 out of 1 in 1j6p

Go back to Nickel Binding Sites List in 1j6p
Nickel binding site 1 out of 1 in the Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Metal-Dependent Hydrolase of Cytosinedemaniase/Chlorohydrolase Family (TM0936) From Thermotoga Maritima at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni501

b:17.2
occ:1.00
NE2 A:HIS57 2.1 15.0 1.0
NE2 A:HIS55 2.1 13.5 1.0
OD1 A:ASP279 2.2 17.0 1.0
O A:HOH657 2.2 17.5 1.0
NE2 A:HIS200 2.3 18.6 1.0
O A:HOH515 2.3 16.3 1.0
CE1 A:HIS57 3.0 12.8 1.0
CE1 A:HIS55 3.1 13.2 1.0
CD2 A:HIS57 3.1 13.4 1.0
CG A:ASP279 3.1 14.0 1.0
CD2 A:HIS200 3.1 18.5 1.0
CD2 A:HIS55 3.2 13.7 1.0
CE1 A:HIS200 3.3 17.0 1.0
OD2 A:ASP279 3.4 15.5 1.0
O A:HOH531 3.9 24.2 1.0
ND1 A:HIS57 4.2 16.1 1.0
ND1 A:HIS55 4.2 13.5 1.0
NE2 A:HIS228 4.2 17.5 1.0
CG A:HIS57 4.2 17.7 1.0
O A:HOH520 4.3 17.0 1.0
CG A:HIS55 4.3 12.9 1.0
CG A:HIS200 4.3 12.4 1.0
ND1 A:HIS200 4.4 17.1 1.0
CB A:ASP279 4.4 12.4 1.0
O A:HOH600 4.5 32.1 1.0
CA A:ASP279 4.6 9.6 1.0
CE1 A:HIS228 4.9 17.9 1.0
N A:GLY280 4.9 17.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Oct 9 14:59:09 2024

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