Atomistry » Nickel » PDB 1jhj-1q0d » 1q3i
Atomistry »
  Nickel »
    PDB 1jhj-1q0d »
      1q3i »

Nickel in PDB 1q3i: Crystal Structure of Na,K-Atpase N-Domain

Enzymatic activity of Crystal Structure of Na,K-Atpase N-Domain

All present enzymatic activity of Crystal Structure of Na,K-Atpase N-Domain:
3.6.3.9;

Protein crystallography data

The structure of Crystal Structure of Na,K-Atpase N-Domain, PDB code: 1q3i was solved by K.O.Hakansson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.60
Space group F 2 3
Cell size a, b, c (Å), α, β, γ (°) 147.310, 147.310, 147.310, 90.00, 90.00, 90.00
R / Rfree (%) 25.1 / 29.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Na,K-Atpase N-Domain (pdb code 1q3i). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Crystal Structure of Na,K-Atpase N-Domain, PDB code: 1q3i:
Jump to Nickel binding site number: 1; 2; 3;

Nickel binding site 1 out of 3 in 1q3i

Go back to Nickel Binding Sites List in 1q3i
Nickel binding site 1 out of 3 in the Crystal Structure of Na,K-Atpase N-Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Na,K-Atpase N-Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni601

b:31.0
occ:0.33
NE2 A:HIS592 2.1 39.1 1.0
NE2 A:HIS590 2.1 34.5 1.0
CE1 A:HIS592 2.9 39.1 1.0
CD2 A:HIS590 3.0 34.5 1.0
CE1 A:HIS590 3.1 34.5 1.0
CD2 A:HIS592 3.2 39.1 1.0
ND1 A:HIS592 4.1 39.1 1.0
CG A:HIS590 4.2 34.5 1.0
ND1 A:HIS590 4.2 34.5 1.0
CG A:HIS592 4.2 39.1 1.0
O A:HOH1 4.8 11.2 0.3

Nickel binding site 2 out of 3 in 1q3i

Go back to Nickel Binding Sites List in 1q3i
Nickel binding site 2 out of 3 in the Crystal Structure of Na,K-Atpase N-Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Na,K-Atpase N-Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni602

b:30.4
occ:1.00
NE2 A:HIS383 2.0 27.6 1.0
O A:HOH81 2.1 30.4 1.0
OE1 A:GLU392 2.1 35.0 1.0
CD A:GLU392 2.9 35.0 1.0
CE1 A:HIS383 2.9 27.6 1.0
CD2 A:HIS383 3.0 27.6 1.0
OE2 A:GLU392 3.0 35.0 1.0
O A:HOH64 3.9 56.8 1.0
ND1 A:HIS383 4.0 27.6 1.0
CG A:HIS383 4.1 27.6 1.0
CG A:GLU392 4.3 35.0 1.0
O A:HOH45 4.8 70.0 1.0
CB A:GLU392 4.9 35.0 1.0

Nickel binding site 3 out of 3 in 1q3i

Go back to Nickel Binding Sites List in 1q3i
Nickel binding site 3 out of 3 in the Crystal Structure of Na,K-Atpase N-Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Crystal Structure of Na,K-Atpase N-Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni603

b:29.1
occ:0.33
NE2 A:HIS589 2.0 20.8 1.0
NE2 A:HIS587 2.4 24.1 1.0
CE1 A:HIS589 2.9 20.8 1.0
CD2 A:HIS589 3.0 20.8 1.0
CD2 A:HIS587 3.3 24.1 1.0
CE1 A:HIS587 3.4 24.1 1.0
ND1 A:HIS589 4.0 20.8 1.0
CG A:HIS589 4.1 20.8 1.0
CG A:HIS587 4.4 24.1 1.0
ND1 A:HIS587 4.4 24.1 1.0

Reference:

K.O.Hakansson, K.O.Hakansson. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 14499619
DOI: 10.1016/J.JMB.2003.07.012
Page generated: Fri Sep 25 07:59:40 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy