Atomistry » Nickel » PDB 1q0f-1sum » 1q99
Atomistry »
  Nickel »
    PDB 1q0f-1sum »
      1q99 »

Nickel in PDB 1q99: Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp

Protein crystallography data

The structure of Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp, PDB code: 1q99 was solved by B.Nolen, J.Ngo, S.Chakrabarti, D.Vu, J.A.Adams, G.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 2.11
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.413, 88.947, 134.822, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp (pdb code 1q99). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp, PDB code: 1q99:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 1q99

Go back to Nickel Binding Sites List in 1q99
Nickel binding site 1 out of 2 in the Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni362

b:39.8
occ:1.00
NE2 A:HIS145 1.9 40.8 1.0
OE2 A:GLU151 2.0 28.3 1.0
NE2 A:HIS234 2.1 23.1 1.0
CE1 A:HIS145 2.8 39.9 1.0
CD2 A:HIS234 2.9 21.7 1.0
CD A:GLU151 3.0 28.8 1.0
CD2 A:HIS145 3.0 40.7 1.0
CE1 A:HIS234 3.3 22.8 1.0
OE1 A:GLU151 3.3 32.3 1.0
OH A:TYR153 3.4 18.3 1.0
ND1 A:HIS145 4.0 42.3 1.0
CZ A:TYR153 4.0 17.2 1.0
CG A:HIS145 4.1 41.4 1.0
O A:HOH2071 4.2 33.9 1.0
CG A:HIS234 4.2 22.7 1.0
O A:LYS235 4.3 23.0 1.0
ND1 A:HIS234 4.3 21.7 1.0
CG A:GLU151 4.3 29.1 1.0
CE2 A:TYR153 4.5 17.1 1.0
CA A:GLY236 4.6 28.4 1.0
CE1 A:TYR153 4.8 18.9 1.0
CD A:PRO237 4.9 32.2 1.0
CA A:ALA147 4.9 31.2 1.0

Nickel binding site 2 out of 2 in 1q99

Go back to Nickel Binding Sites List in 1q99
Nickel binding site 2 out of 2 in the Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the Saccharomyces Cerevisiae Sr Protein Kinsae, SKY1P, Complexed with the Non-Hydrolyzable Atp Analogue, Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni363

b:30.1
occ:1.00
OE2 B:GLU151 1.9 23.2 1.0
CE1 B:HIS145 2.0 36.6 1.0
NE2 B:HIS234 2.2 19.9 1.0
NE2 B:HIS145 2.8 36.5 1.0
CD B:GLU151 2.9 25.2 1.0
CD2 B:HIS234 3.0 17.8 1.0
ND1 B:HIS145 3.1 36.8 1.0
OE1 B:GLU151 3.2 28.6 1.0
CE1 B:HIS234 3.3 19.1 1.0
OH B:TYR153 3.4 20.1 1.0
CD2 B:HIS145 4.0 37.9 1.0
CZ B:TYR153 4.1 14.8 1.0
CG B:HIS145 4.2 37.7 1.0
CG B:HIS234 4.2 19.0 1.0
CG B:GLU151 4.3 24.1 1.0
ND1 B:HIS234 4.3 16.4 1.0
O B:LYS235 4.5 21.4 1.0
O B:PRO146 4.6 34.6 1.0
CE2 B:TYR153 4.7 16.3 1.0
CE1 B:TYR153 4.7 15.4 1.0
CA B:ALA147 4.9 31.4 1.0
CA B:GLY236 4.9 23.8 1.0

Reference:

B.Nolen, J.Ngo, S.Chakrabarti, D.Vu, J.A.Adams, G.Ghosh. Nucleotide-Induced Conformational Changes in the Saccharomyces Cerevisiae Sr Protein Kinase, SKY1P, Revealed By X-Ray Crystallography Biochemistry V. 42 9575 2003.
ISSN: ISSN 0006-2960
PubMed: 12911299
DOI: 10.1021/BI0344331
Page generated: Wed Dec 16 01:14:27 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy