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Nickel in the structure of Nickel-Substituted Rubredoxin (pdb 1r0j)

The binding sites of Nickel atom in the structure of Nickel-Substituted Rubredoxin (pdb code 1r0j). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 1r0j structure was solved by M.MAHER, M.CROSS, M.C.J.WILCE, J.M.GUSS, A.G.WEDD, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.0
Space groupH3
a (A)64.331
b (A)64.331
c (A)32.120
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)21.9
Rfree (%)24.2

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 1r0j

Nickel binding site 1 out of 1 in 1r0j
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stereopicture of Nickel binding site 1 out of 1 in 1r0j
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 1r0j. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys6, A: Val8, A: Cys9, A: Gly10, A: Tyr11, A: Cys39, A: Leu41, A: Cys42, A: Gly43, A: Val44, A: Phe49,

conact list:

AtomAtomDistance (A)
NiO A:Cys64.80
NiCB A:Cys63.01
NiSG A:Cys62.25
NiC A:Cys64.88
NiCA A:Cys64.46
NiCB A:Val84.89
NiC A:Val84.89
NiCG1 A:Val84.81
NiN A:Cys93.89
NiCB A:Cys93.26
NiSG A:Cys92.38
NiC A:Cys94.65
NiCA A:Cys94.07
NiN A:Gly104.66
NiN A:Tyr114.72
NiCB A:Tyr114.21
NiCB A:Cys393.32
NiSG A:Cys392.48
NiCA A:Cys394.78
NiCB A:Leu414.99
NiCB A:Leu414.92
NiN A:Cys423.97
NiCB A:Cys423.47
NiSG A:Cys422.13
NiC A:Cys424.93
NiCA A:Cys424.25
NiN A:Gly434.94
NiCG2 A:Val444.28
NiCZ A:Phe494.87

interactive model:

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