Atomistry » Nickel » PDB 1q0f-1sum » 1r0j
Atomistry »
  Nickel »
    PDB 1q0f-1sum »
      1r0j »

Nickel in PDB 1r0j: Nickel-Substituted Rubredoxin

Protein crystallography data

The structure of Nickel-Substituted Rubredoxin, PDB code: 1r0j was solved by M.Maher, M.Cross, M.C.J.Wilce, J.M.Guss, A.G.Wedd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 64.331, 64.331, 32.120, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 24.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Nickel-Substituted Rubredoxin (pdb code 1r0j). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Nickel-Substituted Rubredoxin, PDB code: 1r0j:

Nickel binding site 1 out of 1 in 1r0j

Go back to Nickel Binding Sites List in 1r0j
Nickel binding site 1 out of 1 in the Nickel-Substituted Rubredoxin


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Nickel-Substituted Rubredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni101

b:38.4
occ:1.00
SG A:CYS42 2.1 29.2 1.0
SG A:CYS6 2.3 24.9 1.0
SG A:CYS9 2.4 29.6 1.0
SG A:CYS39 2.5 29.3 1.0
CB A:CYS6 3.0 24.9 1.0
CB A:CYS9 3.3 28.0 1.0
CB A:CYS39 3.3 30.2 1.0
CB A:CYS42 3.5 30.4 1.0
N A:CYS9 3.9 26.9 1.0
N A:CYS42 4.0 30.6 1.0
CA A:CYS9 4.1 27.9 1.0
CB A:TYR11 4.2 25.7 1.0
CA A:CYS42 4.2 29.8 1.0
CG2 A:VAL44 4.3 25.9 1.0
CA A:CYS6 4.5 25.1 1.0
C A:CYS9 4.6 27.6 1.0
N A:GLY10 4.7 27.3 1.0
N A:TYR11 4.7 26.2 1.0
CA A:CYS39 4.8 30.6 1.0
O A:CYS6 4.8 25.8 1.0
CG1 A:VAL8 4.8 26.8 1.0
CZ A:PHE49 4.9 25.0 1.0
C A:CYS6 4.9 25.4 1.0
CB A:VAL8 4.9 26.9 1.0
C A:VAL8 4.9 27.1 1.0
CB A:LEU41 4.9 31.4 0.5
C A:CYS42 4.9 29.4 1.0
N A:GLY43 4.9 28.2 1.0
CB A:LEU41 5.0 31.2 0.5

Reference:

M.Maher, M.Cross, M.C.Wilce, J.M.Guss, A.G.Wedd. Metal-Substituted Derivatives of the Rubredoxin From Clostridium Pasteurianum. Acta Crystallogr.,Sect.D V. 60 298 2004.
ISSN: ISSN 0907-4449
PubMed: 14747706
DOI: 10.1107/S090744490302794X
Page generated: Wed Oct 9 16:21:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy