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Nickel in PDB 1scr: High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms

Protein crystallography data

The structure of High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms, PDB code: 1scr was solved by C.Emmerich, J.R.Helliwell, M.Redshaw, J.H.Naismith, S.J.Harrop, J.Raftery, A.J.Kalb, J.Yariv, Z.Dauter, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.440, 87.210, 63.060, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / n/a

Other elements in 1scr:

The structure of High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms (pdb code 1scr). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms, PDB code: 1scr:

Nickel binding site 1 out of 1 in 1scr

Go back to Nickel Binding Sites List in 1scr
Nickel binding site 1 out of 1 in the High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 Angstroms and the Ni,Ca-Protein at 2.0 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni238

b:20.1
occ:1.00
NE2 A:HIS24 2.1 9.5 1.0
OD2 A:ASP10 2.1 11.8 1.0
OD1 A:ASP19 2.2 18.0 1.0
OE2 A:GLU8 2.2 16.2 1.0
O A:HOH252 2.3 12.3 1.0
O A:HOH253 2.3 13.5 1.0
CE1 A:HIS24 3.0 11.5 1.0
CG A:ASP19 3.1 17.1 1.0
CG A:ASP10 3.1 11.9 1.0
CD2 A:HIS24 3.2 10.3 1.0
CD A:GLU8 3.2 14.3 1.0
CB A:ASP10 3.5 11.1 1.0
OD2 A:ASP19 3.5 13.1 1.0
OE1 A:GLU8 3.5 14.0 1.0
O A:HOH248 4.1 12.3 1.0
ND1 A:HIS24 4.1 12.9 1.0
OD1 A:ASP10 4.2 12.7 1.0
CA A:CA239 4.2 13.3 1.0
OG A:SER34 4.2 14.3 1.0
CB A:ASP19 4.2 12.8 1.0
CG A:HIS24 4.2 12.3 1.0
O A:HOH367 4.5 43.6 1.0
CG A:GLU8 4.5 11.3 1.0
CA A:ASP19 4.5 14.5 1.0
O A:VAL32 4.8 14.3 1.0
CA A:ASP10 5.0 13.3 1.0

Reference:

C.Emmerich, J.R.Helliwell, M.Redshaw, J.H.Naismith, S.J.Harrop, J.Raftery, A.J.Kalb, J.Yariv, Z.Dauter, K.S.Wilson. High-Resolution Structures of Single-Metal-Substituted Concanavalin A: the Co,Ca-Protein at 1.6 A and the Ni,Ca-Protein at 2.0 A. Acta Crystallogr.,Sect.D V. 50 749 1994.
ISSN: ISSN 0907-4449
PubMed: 15299372
DOI: 10.1107/S0907444994002143
Page generated: Wed Dec 16 01:15:10 2020

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