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Nickel in PDB 1suf: Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State

Enzymatic activity of Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State

All present enzymatic activity of Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State:
1.2.99.2;

Protein crystallography data

The structure of Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State, PDB code: 1suf was solved by H.Dobbek, V.Svetlitchnyi, J.Liss, O.Meyer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.614, 75.004, 71.374, 90.00, 110.97, 90.00
R / Rfree (%) 15.2 / 19

Nickel Binding Sites:

The binding sites of Nickel atom in the Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State (pdb code 1suf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State, PDB code: 1suf:

Nickel binding site 1 out of 1 in 1suf

Go back to Nickel Binding Sites List in 1suf
Nickel binding site 1 out of 1 in the Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogenoformans- Inactive State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni639

b:1.6
occ:0.60
NI1 A:NFS639 0.0 1.6 0.6
FE1 A:NFS639 2.0 7.6 0.3
SG A:CYS526 2.1 10.9 1.0
S3 A:NFS639 2.2 13.3 1.0
S5 A:NFS639 2.4 11.2 1.0
FE3 A:NFS639 2.8 0.3 1.0
O A:HOH1433 2.8 27.7 1.0
O A:HOH1423 2.8 25.3 1.0
O A:HOH1636 3.0 21.4 1.0
FE1 A:NFS639 3.1 4.3 0.6
CB A:CYS526 3.3 11.0 1.0
FE4 A:NFS639 3.6 0.1 1.0
FE2 A:NFS639 3.8 0.5 1.0
S1 A:NFS639 4.1 11.9 1.0
O A:HOH736 4.3 9.9 1.0
CA A:GLY445 4.4 9.1 1.0
SG A:CYS295 4.4 13.8 1.0
SG A:CYS446 4.5 10.4 1.0
CA A:CYS526 4.6 9.7 1.0
NZ A:LYS563 4.8 11.3 1.0
S4 A:NFS639 4.8 10.8 1.0
C A:GLY445 4.8 8.9 1.0
N A:CYS446 5.0 8.4 1.0
N A:GLY445 5.0 9.3 1.0

Reference:

H.Dobbek, V.Svetlitchnyi, J.Liss, O.Meyer. Carbon Monoxide Induced Decomposition of the Active Site [Ni-4FE-5S] Cluster of Co Dehydrogenase J.Am.Chem.Soc. V. 126 5382 2004.
ISSN: ISSN 0002-7863
PubMed: 15113209
DOI: 10.1021/JA037776V
Page generated: Fri Sep 25 08:01:54 2020
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