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Nickel in PDB 1vr3: Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution

Protein crystallography data

The structure of Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution, PDB code: 1vr3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.53 / 2.06
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.136, 79.136, 114.128, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.5

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution (pdb code 1vr3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution, PDB code: 1vr3:

Nickel binding site 1 out of 1 in 1vr3

Go back to Nickel Binding Sites List in 1vr3
Nickel binding site 1 out of 1 in the Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Acireductone Dioxygenase (13543033) From Mus Musculus at 2.06 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni200

b:27.2
occ:1.00
NE2 A:HIS133 2.0 31.9 1.0
NE2 A:HIS90 2.1 33.0 1.0
O6 A:UNL201 2.2 31.9 1.0
NE2 A:HIS88 2.2 34.8 1.0
OE1 A:GLU94 2.2 50.0 1.0
O1 A:UNL201 2.2 34.7 1.0
CD2 A:HIS90 2.9 31.2 1.0
CE1 A:HIS133 2.9 37.4 1.0
CD2 A:HIS133 3.1 36.9 1.0
CD2 A:HIS88 3.1 32.8 1.0
CE1 A:HIS90 3.1 39.2 1.0
CD A:GLU94 3.1 47.0 1.0
CE1 A:HIS88 3.2 37.6 1.0
O2 A:UNL201 3.4 74.9 1.0
OE2 A:GLU94 3.4 60.9 1.0
ND1 A:HIS133 4.1 29.9 1.0
CG A:HIS90 4.1 29.9 1.0
CG A:HIS133 4.2 33.3 1.0
ND1 A:HIS90 4.2 34.0 1.0
CG A:HIS88 4.3 34.6 1.0
O A:HOH216 4.3 34.8 1.0
ND1 A:HIS88 4.3 33.9 1.0
O A:HOH235 4.4 39.2 1.0
CG A:GLU94 4.5 43.9 1.0
O A:HOH348 4.5 60.3 1.0
O3 A:UNL201 4.8 69.1 1.0
CB A:GLU94 4.8 35.2 1.0

Reference:

Q.Xu, R.Schwarzenbacher, S.S.Krishna, D.Mcmullan, S.Agarwalla, K.Quijano, P.Abdubek, E.Ambing, H.Axelrod, T.Biorac, J.M.Canaves, H.J.Chiu, M.A.Elsliger, C.Grittini, S.K.Grzechnik, M.Didonato, J.Hale, E.Hampton, G.W.Han, J.Haugen, M.Hornsby, L.Jaroszewski, H.E.Klock, M.W.Knuth, E.Koesema, A.Kreusch, P.Kuhn, M.D.Miller, K.Moy, E.Nigoghossian, J.Paulsen, R.Reyes, C.Rife, G.Spraggon, R.C.Stevens, H.Van Den Bedem, J.Velasquez, A.White, G.Wolf, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Crystal Structure of Acireductone Dioxygenase (Ard) From Mus Musculus at 2.06 Angstrom Resolution. Proteins V. 64 808 2006.
ISSN: ISSN 0887-3585
PubMed: 16783794
DOI: 10.1002/PROT.20947
Page generated: Fri Sep 25 08:03:04 2020
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