Atomistry » Nickel » PDB 1q0f-1sum » 1ws1
Atomistry »
  Nickel »
    PDB 1q0f-1sum »
      1ws1 »

Nickel in PDB 1ws1: Structure Analysis of Peptide Deformylase From Bacillus Cereus

Enzymatic activity of Structure Analysis of Peptide Deformylase From Bacillus Cereus

All present enzymatic activity of Structure Analysis of Peptide Deformylase From Bacillus Cereus:
3.5.1.88;

Protein crystallography data

The structure of Structure Analysis of Peptide Deformylase From Bacillus Cereus, PDB code: 1ws1 was solved by J.H.Moon, J.K.Park, E.E.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.62 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.310, 44.558, 84.474, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure Analysis of Peptide Deformylase From Bacillus Cereus (pdb code 1ws1). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure Analysis of Peptide Deformylase From Bacillus Cereus, PDB code: 1ws1:

Nickel binding site 1 out of 1 in 1ws1

Go back to Nickel Binding Sites List in 1ws1
Nickel binding site 1 out of 1 in the Structure Analysis of Peptide Deformylase From Bacillus Cereus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure Analysis of Peptide Deformylase From Bacillus Cereus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni200

b:19.2
occ:1.00
NE2 A:HIS132 2.2 18.0 1.0
NE2 A:HIS136 2.2 18.5 1.0
O4 A:BB2400 2.3 23.3 1.0
SG A:CYS90 2.3 20.3 1.0
O2 A:BB2400 2.4 24.6 1.0
C3 A:BB2400 2.9 24.1 1.0
N1 A:BB2400 3.0 21.1 1.0
CD2 A:HIS132 3.0 13.8 1.0
CD2 A:HIS136 3.1 15.8 1.0
NE2 A:GLN51 3.2 18.0 1.0
CE1 A:HIS136 3.2 15.9 1.0
CE1 A:HIS132 3.3 22.6 1.0
CB A:CYS90 3.4 20.4 1.0
O A:HOH411 3.6 17.7 1.0
CD A:GLN51 3.8 21.1 1.0
CA A:CYS90 3.9 19.1 1.0
OE1 A:GLN51 3.9 15.8 1.0
CG A:HIS132 4.2 16.6 1.0
N A:LEU91 4.3 22.4 1.0
CG A:HIS136 4.3 15.3 1.0
ND1 A:HIS132 4.3 17.7 1.0
C5 A:BB2400 4.3 23.9 1.0
ND1 A:HIS136 4.3 17.7 1.0
C A:CYS90 4.5 22.9 1.0
C6 A:BB2400 4.6 25.0 1.0
O A:HOH408 4.7 19.3 1.0
O A:GLY89 4.8 22.5 1.0
C7 A:BB2400 4.9 25.3 1.0
OE2 A:GLU133 4.9 22.7 1.0
CG A:GLN51 5.0 15.7 1.0

Reference:

J.H.Moon, J.K.Park, E.E.Kim. Structure Analysis of Peptide Deformylase From Bacillus Cereus Proteins V. 61 217 2005.
ISSN: ISSN 0887-3585
PubMed: 16049914
DOI: 10.1002/PROT.20526
Page generated: Fri Sep 25 08:03:22 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy