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Nickel in PDB 1wvc: Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp

Enzymatic activity of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp

All present enzymatic activity of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp:
2.7.7.33;

Protein crystallography data

The structure of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp, PDB code: 1wvc was solved by N.M.Koropatkin, W.W.Cleland, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.50
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.200, 84.200, 157.400, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1wvc:

The structure of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp (pdb code 1wvc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp, PDB code: 1wvc:

Nickel binding site 1 out of 1 in 1wvc

Go back to Nickel Binding Sites List in 1wvc
Nickel binding site 1 out of 1 in the Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed with Ctp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni403

b:58.4
occ:1.00
 NE2 A:HIS79 2.5 48.0 1.0
CD2 A:HIS79 3.1 52.8 1.0
CE1 A:HIS79 3.6 49.8 1.0
CG A:HIS79 4.4 57.5 1.0
CB A:GLU86 4.4 42.6 1.0
ND1 A:HIS79 4.6 58.0 1.0
CB A:THR77 4.8 38.1 1.0
CG2 A:THR77 4.9 44.7 1.0

Reference:

N.M.Koropatkin, W.W.Cleland, H.M.Holden. Kinetic and Structural Analysis of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi. J.Biol.Chem. V. 280 10774 2005.
ISSN: ISSN 0021-9258
PubMed: 15634670
DOI: 10.1074/JBC.M414111200
Page generated: Wed Oct 9 16:31:34 2024

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