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Nickel in PDB 1xi3: Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001

Enzymatic activity of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001

All present enzymatic activity of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001:
2.5.1.3;

Protein crystallography data

The structure of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001, PDB code: 1xi3 was solved by W.Zhou, L.Chen, W.Tempel, Z.-J.Liu, J.Habel, D.Lee, D.Lin, S.-H.Chang, B.D.Dillard, J.C.Eneh, R.C.Hopkins, F.E.Jenney Jr., L.-L.C.Kelley, H.-S.Lee, T.Li, F.L.Poole Ii, C.Shah, F.J.Sugar, W.B.Arendall Iii, J.S.Richardson, D.C.Richardson, J.P.Rose, M.W.W.Adams, B.-C.Wang, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.09 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 72.386, 81.210, 152.903, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.5

Nickel Binding Sites:

The binding sites of Nickel atom in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001 (pdb code 1xi3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001, PDB code: 1xi3:

Nickel binding site 1 out of 1 in 1xi3

Go back to Nickel Binding Sites List in 1xi3
Nickel binding site 1 out of 1 in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni302

b:9.4
occ:0.50
OE1 B:GLU26 2.4 15.8 1.0
OE1 B:GLU29 2.4 20.1 1.0
OE2 B:GLU26 2.4 13.8 1.0
OE2 B:GLU29 2.6 20.4 1.0
CD B:GLU26 2.7 15.1 1.0
CD B:GLU29 2.9 14.1 1.0
CG B:GLU26 4.2 12.9 1.0
CG B:GLU29 4.4 15.6 1.0
NE B:ARG25 4.5 18.7 1.0
O B:HOH459 4.7 21.2 1.0
O B:HOH426 4.8 13.9 1.0
CD B:ARG192 4.8 15.2 1.0
NH2 B:ARG25 4.8 22.7 1.0
NH1 B:ARG192 4.9 16.4 1.0
CB B:GLU26 5.0 12.2 1.0
CA B:GLU26 5.0 10.7 1.0

Reference:

W.Zhou, L.Chen, W.Tempel, Z.-J.Liu, J.Habel, D.Lee, D.Lin, S.-H.Chang, B.D.Dillard, J.C.Eneh, R.C.Hopkins, F.E.Jenney Jr., L.-L.C.Kelley, H.-S.Lee, T.Li, F.L.Poole Ii, C.Shah, F.J.Sugar, W.B.Arendall Iii, J.S.Richardson, D.C.Richardson, J.P.Rose, M.W.W.Adams, B.-C.Wang, Southeast Collaboratory For Structural Genomics. Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu-1255191-001 To Be Published.
Page generated: Fri Sep 25 08:03:56 2020
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