Nickel in PDB 1y1o: X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus

The structure of X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus, PDB code: 1y1o was solved by J.Osipiuk, H.Li, S.Moy, F.Collart, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.10 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	80.261, 81.018, 106.279, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 24.8

The binding sites of Nickel atom in the X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus (pdb code 1y1o). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus, PDB code: 1y1o:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni321 b:27.0 occ:1.00 ND1 A:HIS151 2.1 25.1 1.0 ND1 A:HIS175 2.1 27.8 1.0 OE2 A:GLU171 2.1 31.3 1.0 O A:HOH340 2.2 9.6 1.0 CD A:GLU171 2.9 35.2 1.0 CE1 A:HIS151 3.0 24.5 1.0 OE1 A:GLU171 3.0 32.8 1.0 CE1 A:HIS175 3.0 31.8 1.0 CG A:HIS151 3.0 23.2 1.0 CG A:HIS175 3.1 30.0 1.0 CB A:HIS151 3.4 24.3 1.0 CB A:HIS175 3.5 28.8 1.0 NE2 A:HIS151 4.1 27.3 1.0 CD2 A:HIS151 4.1 22.8 1.0 NE2 A:HIS175 4.2 31.2 1.0 CA A:HIS151 4.2 24.4 1.0 NE1 A:TRP155 4.2 20.3 1.0 CD2 A:HIS175 4.2 29.6 1.0 CG A:GLU171 4.4 34.4 1.0 CB C:ALA127 4.6 25.0 1.0 CD1 A:TRP155 4.6 20.8 1.0 O C:ALA127 4.9 26.0 1.0 O D:GLY48 4.9 31.4 1.0

Nickel binding site 2 out of 2 in the X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of X-Ray Crystal Structure of Penicillin-Binding Protein- Related Factor A From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni322 b:29.3 occ:1.00 ND1 C:HIS151 2.1 19.1 1.0 O C:HOH328 2.1 10.4 1.0 OE2 C:GLU171 2.2 31.7 1.0 ND1 C:HIS175 2.2 33.4 1.0 CD C:GLU171 2.9 37.1 1.0 CE1 C:HIS151 3.0 20.4 1.0 OE1 C:GLU171 3.0 34.5 1.0 CG C:HIS151 3.1 19.8 1.0 CE1 C:HIS175 3.1 32.4 1.0 CG C:HIS175 3.2 30.5 1.0 CB C:HIS151 3.5 21.4 1.0 CB C:HIS175 3.5 27.4 1.0 NE2 C:HIS151 4.0 20.4 1.0 NE1 C:TRP155 4.0 26.4 1.0 CD2 C:HIS151 4.1 22.6 1.0 CA C:HIS151 4.2 22.5 1.0 NE2 C:HIS175 4.3 32.8 1.0 CD2 C:HIS175 4.3 29.6 1.0 CG C:GLU171 4.4 34.2 1.0 CD1 C:TRP155 4.5 27.2 1.0 CB A:ALA127 4.7 22.1 1.0 O B:GLY48 4.8 28.4 1.0 O C:HOH334 5.0 43.5 1.0 CA C:HIS175 5.0 28.2 1.0

J.Osipiuk, H.Li, S.Moy, F.Collart, A.Joachimiak. X-Ray Crystal Structure of Penicillin-Binding Protein-Related Factor A From Bacillus Stearothermophilus To Be Published.