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PDB 1xu1-2c0n »
1yrq »
Nickel in PDB 1yrq: Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Enzymatic activity of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
All present enzymatic activity of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase:
1.12.2.1;
1.12.2.1;
Protein crystallography data
The structure of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase, PDB code: 1yrq
was solved by
A.Volbeda,
L.Martin,
C.Cavazza,
M.Matho,
B.W.Faber,
W.Roseboom,
S.P.Albracht,
E.Garcin,
M.Rousset,
J.C.Fontecilla-Camps,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 2.10 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 127.500, 99.700, 183.200, 90.00, 91.80, 90.00 |
| R / Rfree (%) | 17.1 / 22 |
Other elements in 1yrq:
The structure of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase also contains other interesting chemical elements:
| Magnesium | (Mg) | 12 atoms |
| Iron | (Fe) | 144 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
(pdb code 1yrq). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 6 binding sites of Nickel where determined in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase, PDB code: 1yrq:
Jump to Nickel binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Nickel where determined in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase, PDB code: 1yrq:
Jump to Nickel binding site number: 1; 2; 3; 4; 5; 6;
Nickel binding site 1 out of 6 in 1yrq
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Nickel Binding Sites List in 1yrq
Nickel binding site 1 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Nickel binding site 2 out of 6 in 1yrq
Go back to
Nickel Binding Sites List in 1yrq
Nickel binding site 2 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Nickel binding site 3 out of 6 in 1yrq
Go back to
Nickel Binding Sites List in 1yrq
Nickel binding site 3 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Nickel binding site 4 out of 6 in 1yrq
Go back to
Nickel Binding Sites List in 1yrq
Nickel binding site 4 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Nickel binding site 5 out of 6 in 1yrq
Go back to
Nickel Binding Sites List in 1yrq
Nickel binding site 5 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 5 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Nickel binding site 6 out of 6 in 1yrq
Go back to
Nickel Binding Sites List in 1yrq
Nickel binding site 6 out
of 6 in the Structure of the Ready Oxidized Form of [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 6 of Structure of the Ready Oxidized Form of [Nife]-Hydrogenase within 5.0Å range:
|
Reference:
A.Volbeda,
L.Martin,
C.Cavazza,
M.Matho,
B.W.Faber,
W.Roseboom,
S.P.Albracht,
E.Garcin,
M.Rousset,
J.C.Fontecilla-Camps.
Structural Differences Between the Ready and Unready Oxidized States of [Nife] Hydrogenases. J.Biol.Inorg.Chem. V. 10 239 2005.
ISSN: ISSN 0949-8257
PubMed: 15803334
DOI: 10.1007/S00775-005-0632-X
Page generated: Wed Oct 9 16:33:11 2024
ISSN: ISSN 0949-8257
PubMed: 15803334
DOI: 10.1007/S00775-005-0632-X
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