Atomistry » Nickel » PDB 1xu1-2c0n » 1ztc
Atomistry »
  Nickel »
    PDB 1xu1-2c0n »
      1ztc »

Nickel in PDB 1ztc: Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution, PDB code: 1ztc was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.783, 127.343, 152.224, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 17.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution (pdb code 1ztc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 8 binding sites of Nickel where determined in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution, PDB code: 1ztc:
Jump to Nickel binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Nickel binding site 1 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 1 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:65.1
occ:1.00
 OD2 A:ASP162 2.2 51.5 1.0
NE2 A:HIS199 2.2 43.7 1.0
NE2 A:HIS74 2.2 46.5 1.0
O A:HOH425 2.5 40.5 1.0
O A:HOH387 2.6 50.0 1.0
OD1 A:ASP162 2.8 60.3 1.0
OD2 A:ASP73 2.9 56.0 1.0
CG A:ASP162 2.9 49.7 1.0
CD2 A:HIS74 3.0 43.3 1.0
CE1 A:HIS199 3.2 43.5 1.0
CD2 A:HIS199 3.2 47.5 1.0
CE1 A:HIS74 3.4 47.5 1.0
NI A:NI302 3.6 59.9 1.0
O A:HOH402 3.7 62.6 1.0
O A:HOH306 3.8 43.0 1.0
CG A:ASP73 3.8 51.8 1.0
OD1 A:ASP73 4.0 52.2 1.0
CG A:HIS74 4.2 45.9 1.0
ND1 A:HIS199 4.3 48.7 1.0
CE1 A:HIS69 4.3 46.3 1.0
CG A:HIS199 4.3 44.4 1.0
CB A:ASP162 4.3 45.3 1.0
O A:HOH435 4.4 62.2 1.0
ND1 A:HIS74 4.4 46.6 1.0
NE2 A:HIS69 4.4 46.3 1.0
CB A:PRO198 4.8 44.4 1.0
CG A:PRO198 5.0 43.3 1.0

Nickel binding site 2 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 2 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:59.9
occ:1.00
 NE2 A:HIS69 2.2 46.3 1.0
O A:HOH425 2.2 40.5 1.0
ND1 A:HIS71 2.2 57.8 1.0
NE2 A:HIS140 2.3 52.3 1.0
OD2 A:ASP162 2.3 51.5 1.0
O A:HOH306 2.4 43.0 1.0
CE1 A:HIS71 3.0 61.5 1.0
CE1 A:HIS69 3.1 46.3 1.0
CD2 A:HIS69 3.1 43.8 1.0
CD2 A:HIS140 3.2 48.5 1.0
CE1 A:HIS140 3.2 48.5 1.0
CG A:HIS71 3.2 59.0 1.0
CG A:ASP162 3.4 49.7 1.0
NI A:NI301 3.6 65.1 1.0
CB A:HIS71 3.7 49.0 1.0
CB A:ASP162 3.8 45.3 1.0
O A:HOH387 3.9 50.0 1.0
NE2 A:HIS71 4.1 66.2 1.0
ND1 A:HIS69 4.2 44.9 1.0
CG A:HIS69 4.3 44.7 1.0
CD2 A:HIS71 4.3 66.9 1.0
O A:HOH402 4.3 62.6 1.0
ND1 A:HIS140 4.3 51.9 1.0
CG A:HIS140 4.4 47.5 1.0
NE2 A:HIS74 4.4 46.5 1.0
OD1 A:ASP162 4.5 60.3 1.0
CD2 A:HIS74 4.5 43.3 1.0
OD1 A:ASP73 4.8 52.2 1.0

Nickel binding site 3 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 3 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:65.7
occ:1.00
 NE2 B:HIS199 2.2 49.7 1.0
OD2 B:ASP162 2.2 52.9 1.0
NE2 B:HIS74 2.2 45.7 1.0
O B:HOH402 2.5 51.6 1.0
OD1 B:ASP162 2.7 55.0 1.0
O B:HOH336 2.8 67.5 1.0
CG B:ASP162 2.9 48.1 1.0
OD2 B:ASP73 2.9 52.5 1.0
CD2 B:HIS74 3.1 46.7 1.0
CD2 B:HIS199 3.1 47.6 1.0
CE1 B:HIS199 3.2 44.0 1.0
CE1 B:HIS74 3.3 47.9 1.0
O B:HOH403 3.3 67.6 1.0
NI B:NI302 3.5 59.3 1.0
CG B:ASP73 3.8 51.6 1.0
O B:HOH305 3.8 42.8 1.0
OD1 B:ASP73 4.0 51.3 1.0
CG B:HIS74 4.3 46.0 1.0
CG B:HIS199 4.3 48.2 1.0
ND1 B:HIS199 4.3 48.8 1.0
CB B:ASP162 4.4 46.6 1.0
ND1 B:HIS74 4.4 46.0 1.0
CE1 B:HIS69 4.4 45.6 1.0
NE2 B:HIS69 4.4 44.2 1.0
CB B:PRO198 4.8 44.7 1.0

Nickel binding site 4 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 4 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni302

b:59.3
occ:1.00
 ND1 B:HIS71 2.2 57.7 1.0
NE2 B:HIS69 2.2 44.2 1.0
OD2 B:ASP162 2.2 52.9 1.0
NE2 B:HIS140 2.3 51.7 1.0
O B:HOH402 2.3 51.6 1.0
O B:HOH305 2.6 42.8 1.0
CE1 B:HIS71 3.0 63.2 1.0
CD2 B:HIS69 3.1 41.7 1.0
CE1 B:HIS69 3.2 45.6 1.0
CD2 B:HIS140 3.2 48.3 1.0
CG B:HIS71 3.2 56.0 1.0
CE1 B:HIS140 3.3 45.7 1.0
CG B:ASP162 3.3 48.1 1.0
NI B:NI301 3.5 65.7 1.0
CB B:HIS71 3.7 46.8 1.0
CB B:ASP162 3.8 46.6 1.0
NE2 B:HIS71 4.1 68.4 1.0
O B:HOH336 4.1 67.5 1.0
CG B:HIS69 4.2 45.1 1.0
CD2 B:HIS71 4.2 66.5 1.0
ND1 B:HIS69 4.3 48.4 1.0
NE2 B:HIS74 4.3 45.7 1.0
O B:HOH403 4.3 67.6 1.0
OD1 B:ASP162 4.3 55.0 1.0
CG B:HIS140 4.3 47.5 1.0
ND1 B:HIS140 4.3 48.5 1.0
CD2 B:HIS74 4.5 46.7 1.0
OD1 B:ASP73 4.8 51.3 1.0

Nickel binding site 5 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 5 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 5 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni301

b:65.0
occ:1.00
 OD2 C:ASP162 2.2 51.6 1.0
NE2 C:HIS199 2.3 48.6 1.0
NE2 C:HIS74 2.3 41.5 1.0
O C:HOH393 2.4 47.7 1.0
OD1 C:ASP162 2.8 56.3 1.0
CG C:ASP162 2.8 49.1 1.0
O C:HOH361 2.9 64.9 1.0
OD2 C:ASP73 2.9 50.5 1.0
CD2 C:HIS74 3.1 48.3 1.0
CD2 C:HIS199 3.2 46.6 1.0
CE1 C:HIS199 3.2 44.3 1.0
CE1 C:HIS74 3.4 44.1 1.0
NI C:NI302 3.5 59.7 1.0
CG C:ASP73 3.9 51.5 1.0
O C:HOH305 3.9 45.0 1.0
OD1 C:ASP73 4.0 49.2 1.0
CE1 C:HIS69 4.3 48.1 1.0
CB C:ASP162 4.3 47.1 1.0
ND1 C:HIS199 4.3 49.6 1.0
NE2 C:HIS69 4.3 44.1 1.0
CG C:HIS199 4.4 45.6 1.0
CG C:HIS74 4.4 41.6 1.0
ND1 C:HIS74 4.5 45.0 1.0
CB C:PRO198 4.8 44.0 1.0
CG C:PRO198 5.0 43.3 1.0

Nickel binding site 6 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 6 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 6 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni302

b:59.7
occ:1.00
 NE2 C:HIS69 2.1 44.1 1.0
ND1 C:HIS71 2.2 57.6 1.0
OD2 C:ASP162 2.3 51.6 1.0
NE2 C:HIS140 2.3 48.9 1.0
O C:HOH393 2.4 47.7 1.0
O C:HOH305 2.5 45.0 1.0
CE1 C:HIS71 3.0 62.3 1.0
CD2 C:HIS69 3.1 43.7 1.0
CE1 C:HIS69 3.2 48.1 1.0
CD2 C:HIS140 3.2 49.0 1.0
CG C:HIS71 3.3 56.5 1.0
CE1 C:HIS140 3.3 43.3 1.0
CG C:ASP162 3.3 49.1 1.0
NI C:NI301 3.5 65.0 1.0
CB C:HIS71 3.7 48.0 1.0
CB C:ASP162 3.8 47.1 1.0
NE2 C:HIS71 4.1 66.3 1.0
O C:HOH361 4.2 64.9 1.0
CG C:HIS69 4.2 44.0 1.0
ND1 C:HIS69 4.2 48.7 1.0
CD2 C:HIS71 4.3 66.3 1.0
NE2 C:HIS74 4.3 41.5 1.0
ND1 C:HIS140 4.4 48.8 1.0
CG C:HIS140 4.4 47.5 1.0
OD1 C:ASP162 4.4 56.3 1.0
CD2 C:HIS74 4.6 48.3 1.0
OD1 C:ASP73 4.8 49.2 1.0

Nickel binding site 7 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 7 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 7 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni301

b:65.3
occ:1.00
 OD2 D:ASP162 2.2 50.0 1.0
NE2 D:HIS199 2.2 45.8 1.0
NE2 D:HIS74 2.3 45.2 1.0
O D:HOH399 2.4 49.1 1.0
O D:HOH409 2.5 55.8 1.0
OD1 D:ASP162 2.7 56.2 1.0
CG D:ASP162 2.8 48.8 1.0
OD2 D:ASP73 2.9 54.0 1.0
CD2 D:HIS74 3.1 43.9 1.0
CD2 D:HIS199 3.1 48.1 1.0
CE1 D:HIS199 3.2 44.3 1.0
CE1 D:HIS74 3.3 47.3 1.0
NI D:NI302 3.5 58.6 1.0
O D:HOH306 3.8 45.9 1.0
CG D:ASP73 3.9 52.1 1.0
OD1 D:ASP73 4.1 52.6 1.0
CG D:HIS74 4.3 44.0 1.0
CG D:HIS199 4.3 45.5 1.0
CB D:ASP162 4.3 45.6 1.0
ND1 D:HIS199 4.3 46.9 1.0
CE1 D:HIS69 4.3 47.8 1.0
ND1 D:HIS74 4.4 44.3 1.0
NE2 D:HIS69 4.4 41.5 1.0
O D:HOH382 4.6 61.2 1.0
CB D:PRO198 4.7 44.6 1.0
CG D:PRO198 5.0 42.3 1.0

Nickel binding site 8 out of 8 in 1ztc

Go back to Nickel Binding Sites List in 1ztc
Nickel binding site 8 out of 8 in the Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 8 of Crystal Structure of A Putative Metallo-Beta-Lactamase (TM0894) From Thermotoga Maritima at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni302

b:58.6
occ:1.00
 ND1 D:HIS71 2.2 56.1 1.0
NE2 D:HIS69 2.2 41.5 1.0
OD2 D:ASP162 2.3 50.0 1.0
NE2 D:HIS140 2.3 51.5 1.0
O D:HOH399 2.4 49.1 1.0
O D:HOH306 2.5 45.9 1.0
CE1 D:HIS71 3.0 61.5 1.0
CE1 D:HIS69 3.1 47.8 1.0
CD2 D:HIS69 3.1 44.7 1.0
CE1 D:HIS140 3.2 47.6 1.0
CD2 D:HIS140 3.3 50.3 1.0
CG D:HIS71 3.3 57.6 1.0
CG D:ASP162 3.3 48.8 1.0
NI D:NI301 3.5 65.3 1.0
CB D:HIS71 3.7 47.0 1.0
CB D:ASP162 3.8 45.6 1.0
O D:HOH409 3.9 55.8 1.0
NE2 D:HIS71 4.2 65.7 1.0
ND1 D:HIS69 4.3 47.7 1.0
CG D:HIS69 4.3 44.3 1.0
NE2 D:HIS74 4.3 45.2 1.0
ND1 D:HIS140 4.3 49.1 1.0
CD2 D:HIS71 4.3 65.6 1.0
CG D:HIS140 4.4 46.9 1.0
OD1 D:ASP162 4.4 56.2 1.0
CD2 D:HIS74 4.5 43.9 1.0
OD1 D:ASP73 4.8 52.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Oct 9 16:35:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy