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Nickel in PDB 2atf: X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056

Enzymatic activity of X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056

All present enzymatic activity of X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056:
1.13.11.20;

Protein crystallography data

The structure of X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056, PDB code: 2atf was solved by G.E.Wesenberg, G.N.Phillips Jr., J.G.Mccoy, E.Bitto, C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.86 / 1.75
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.550, 57.550, 122.076, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21.6

Nickel Binding Sites:

The binding sites of Nickel atom in the X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 (pdb code 2atf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056, PDB code: 2atf:

Nickel binding site 1 out of 1 in 2atf

Go back to Nickel Binding Sites List in 2atf
Nickel binding site 1 out of 1 in the X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of X-Ray Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:13.3
occ:1.00
NE2 A:HIS140 2.1 11.8 1.0
NE2 A:HIS86 2.1 12.5 1.0
NE2 A:HIS88 2.1 10.0 1.0
O A:HOH359 2.2 24.0 1.0
O A:HOH360 2.4 24.2 1.0
O A:HOH361 2.4 18.8 1.0
CE1 A:HIS88 3.0 15.6 1.0
CD2 A:HIS86 3.0 15.0 1.0
CD2 A:HIS140 3.1 12.4 1.0
CE1 A:HIS140 3.1 12.3 1.0
CE1 A:HIS86 3.1 10.0 1.0
CD2 A:HIS88 3.1 14.8 1.0
O A:HOH412 4.2 40.7 1.0
OH A:TYR157 4.2 22.9 1.0
ND1 A:HIS88 4.2 13.8 1.0
ND1 A:HIS140 4.2 11.4 1.0
ND1 A:HIS86 4.2 11.4 1.0
CG A:HIS86 4.2 13.3 1.0
CG A:HIS140 4.2 12.0 1.0
CG A:HIS88 4.2 12.0 1.0
O A:HOH277 4.4 19.4 1.0
SG A:CYS93 4.4 20.1 1.0
CG2 A:VAL142 4.9 13.1 1.0
CG2 A:ILE133 4.9 11.0 1.0

Reference:

J.G.Mccoy, L.J.Bailey, E.Bitto, C.A.Bingman, D.J.Aceti, B.G.Fox, G.N.Phillips. Structure and Mechanism of Mouse Cysteine Dioxygenase. Proc.Natl.Acad.Sci.Usa V. 103 3084 2006.
ISSN: ISSN 0027-8424
PubMed: 16492780
DOI: 10.1073/PNAS.0509262103
Page generated: Fri Sep 25 08:06:13 2020
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