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Nickel in PDB 2c0n: Crystal Structure of A197 From Stiv

Protein crystallography data

The structure of Crystal Structure of A197 From Stiv, PDB code: 2c0n was solved by E.T.Larson, D.Reiter, M.Young, C.M.Lawrence, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.26 / 1.86
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.422, 70.560, 81.266, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 20.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A197 From Stiv (pdb code 2c0n). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A197 From Stiv, PDB code: 2c0n:

Nickel binding site 1 out of 1 in 2c0n

Go back to Nickel Binding Sites List in 2c0n
Nickel binding site 1 out of 1 in the Crystal Structure of A197 From Stiv


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A197 From Stiv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1204

b:27.8
occ:0.50
NE2 A:HIS200 2.0 30.6 1.0
ND1 A:HIS198 2.1 26.9 1.0
CE1 A:HIS200 3.0 32.0 1.0
CE1 A:HIS198 3.0 28.3 1.0
CD2 A:HIS200 3.0 34.1 1.0
CG A:HIS198 3.1 28.9 1.0
CB A:HIS198 3.5 30.2 1.0
CA A:HIS198 4.0 30.4 1.0
ND1 A:HIS200 4.1 33.0 1.0
NE2 A:HIS198 4.1 27.4 1.0
CG A:HIS200 4.1 34.7 1.0
CD2 A:HIS198 4.2 27.3 1.0
O A:LYS197 4.5 26.1 1.0
O A:HOH2103 4.9 42.6 1.0
C A:HIS198 4.9 32.0 1.0
O A:HIS198 4.9 32.4 1.0

Reference:

E.T.Larson, D.Reiter, M.Young, C.M.Lawrence. Structure of A197 From Sulfolobus Turreted Icosahedral Virus: A Crenarchaeal Viral Glycosyltransferase Exhibiting the Gt-A Fold. J.Virol. V. 80 7636 2006.
ISSN: ISSN 0022-538X
PubMed: 16840342
DOI: 10.1128/JVI.00567-06
Page generated: Thu Oct 29 06:16:42 2020
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