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Nickel in PDB 2c5d: Structure of A Minimal GAS6-Axl Complex

Enzymatic activity of Structure of A Minimal GAS6-Axl Complex

All present enzymatic activity of Structure of A Minimal GAS6-Axl Complex:
2.7.1.112;

Protein crystallography data

The structure of Structure of A Minimal GAS6-Axl Complex, PDB code: 2c5d was solved by T.Sasaki, P.G.Knyazev, N.J.Clout, Y.Cheburkin, W.Goehring, A.Ullrich, R.Timpl, E.Hohenester, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20 / 3.3
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 292.951, 292.951, 63.951, 90.00, 90.00, 120.00
R / Rfree (%) 24.09 / 26.53

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of A Minimal GAS6-Axl Complex (pdb code 2c5d). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure of A Minimal GAS6-Axl Complex, PDB code: 2c5d:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 2c5d

Go back to Nickel Binding Sites List in 2c5d
Nickel binding site 1 out of 2 in the Structure of A Minimal GAS6-Axl Complex


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of A Minimal GAS6-Axl Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni1218

b:0.3
occ:1.00
NE2 C:HIS116 2.0 93.9 1.0
CD2 C:HIS116 2.6 92.7 1.0
CE1 C:HIS116 3.2 94.0 1.0
CG C:HIS116 3.8 91.9 1.0
ND1 C:HIS116 4.1 93.9 1.0

Nickel binding site 2 out of 2 in 2c5d

Go back to Nickel Binding Sites List in 2c5d
Nickel binding site 2 out of 2 in the Structure of A Minimal GAS6-Axl Complex


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of A Minimal GAS6-Axl Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni1218

b:0.2
occ:1.00
NE2 D:HIS116 1.7 92.8 1.0
CD2 D:HIS116 2.4 92.5 1.0
CE1 D:HIS116 2.9 92.5 1.0
CG D:HIS116 3.7 91.4 1.0
ND1 D:HIS116 3.8 93.0 1.0

Reference:

T.Sasaki, P.G.Knyazev, N.J.Clout, Y.Cheburkin, W.Goehring, A.Ullrich, R.Timpl, E.Hohenester. Structural Basis For GAS6-Axl Signalling. Embo J. V. 25 80 2006.
ISSN: ISSN 0261-4189
PubMed: 16362042
DOI: 10.1038/SJ.EMBOJ.7600912
Page generated: Fri Sep 25 08:07:11 2020
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