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Nickel in PDB 2c9h: Structure of Mitochondrial Beta-Ketoacyl Synthase

Enzymatic activity of Structure of Mitochondrial Beta-Ketoacyl Synthase

All present enzymatic activity of Structure of Mitochondrial Beta-Ketoacyl Synthase:
2.3.1.41;

Protein crystallography data

The structure of Structure of Mitochondrial Beta-Ketoacyl Synthase, PDB code: 2c9h was solved by G.Bunkoczi, X.Wu, C.Smee, O.Gileadi, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 116.725, 58.056, 58.987, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 24

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of Mitochondrial Beta-Ketoacyl Synthase (pdb code 2c9h). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Mitochondrial Beta-Ketoacyl Synthase, PDB code: 2c9h:

Nickel binding site 1 out of 1 in 2c9h

Go back to Nickel Binding Sites List in 2c9h
Nickel binding site 1 out of 1 in the Structure of Mitochondrial Beta-Ketoacyl Synthase


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Mitochondrial Beta-Ketoacyl Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1445

b:10.5
occ:0.50
ND1 A:HIS210 2.0 32.7 1.0
O A:HOH2003 2.1 30.6 1.0
O A:HOH2127 2.5 42.4 1.0
CE1 A:HIS210 2.9 34.5 1.0
CG A:HIS210 3.0 32.0 1.0
CB A:HIS210 3.5 13.4 1.0
O A:HOH2002 3.7 22.6 1.0
NE2 A:HIS26 3.7 47.2 1.0
CA A:HIS210 3.9 9.6 1.0
NE2 A:HIS210 4.0 30.1 1.0
CE1 A:HIS26 4.1 45.0 1.0
CD2 A:HIS210 4.1 35.3 1.0
CD2 A:HIS26 4.2 50.0 1.0
O A:LEU25 4.7 28.1 1.0
ND1 A:HIS26 4.8 49.8 1.0
CG A:HIS26 4.8 48.1 1.0
N A:HIS210 4.8 13.3 1.0
O A:HIS210 5.0 17.6 1.0

Reference:

G.Bunkoczi, X.Wu, C.Smee, O.Gileadi, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, U.Oppermann. Structure of Mitochondrial Beta-Ketoacyl Synthase To Be Published.
Page generated: Fri Sep 25 08:07:23 2020
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