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Nickel in PDB 2def: Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures

Enzymatic activity of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures

All present enzymatic activity of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures:
3.5.1.31;

Nickel Binding Sites:

The binding sites of Nickel atom in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures (pdb code 2def). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures, PDB code: 2def:

Nickel binding site 1 out of 1 in 2def

Go back to Nickel Binding Sites List in 2def
Nickel binding site 1 out of 1 in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni148

b:0.0
occ:1.00
NE2 A:HIS136 2.0 0.0 1.0
NE2 A:HIS132 2.0 0.0 1.0
SG A:CYS90 2.3 0.0 1.0
HB3 A:CYS90 2.3 0.0 1.0
HB2 A:CYS90 2.5 0.0 1.0
CB A:CYS90 2.6 0.0 1.0
HD13 A:ILE93 2.8 0.0 1.0
CD2 A:HIS132 3.0 0.0 1.0
CE1 A:HIS136 3.0 0.0 1.0
CD2 A:HIS136 3.0 0.0 1.0
CE1 A:HIS132 3.0 0.0 1.0
HE1 A:HIS136 3.1 0.0 1.0
HD2 A:HIS136 3.2 0.0 1.0
HD2 A:HIS132 3.2 0.0 1.0
HE1 A:HIS132 3.2 0.0 1.0
HG12 A:ILE93 3.5 0.0 1.0
HG13 A:ILE93 3.5 0.0 1.0
H A:LEU91 3.7 0.0 1.0
CD1 A:ILE93 3.7 0.0 1.0
HE22 A:GLN50 3.8 0.0 1.0
CG1 A:ILE93 3.8 0.0 1.0
H A:PHE142 3.8 0.0 1.0
ND1 A:HIS136 4.1 0.0 1.0
ND1 A:HIS132 4.1 0.0 1.0
CA A:CYS90 4.1 0.0 1.0
CG A:HIS132 4.1 0.0 1.0
CG A:HIS136 4.1 0.0 1.0
HD1 A:PHE142 4.2 0.0 1.0
CD1 A:PHE142 4.2 0.0 1.0
HD12 A:ILE93 4.3 0.0 1.0
H A:CYS90 4.4 0.0 1.0
HD11 A:ILE93 4.4 0.0 1.0
HD22 A:LEU141 4.5 0.0 1.0
CG A:PHE142 4.5 0.0 1.0
CE1 A:PHE142 4.6 0.0 1.0
HB3 A:PHE142 4.6 0.0 1.0
N A:LEU91 4.6 0.0 1.0
HA A:CYS90 4.7 0.0 1.0
HB2 A:SER92 4.7 0.0 1.0
NE2 A:GLN50 4.7 0.0 1.0
N A:PHE142 4.7 0.0 1.0
N A:CYS90 4.7 0.0 1.0
OE2 A:GLU133 4.8 0.0 1.0
HE1 A:PHE142 4.8 0.0 1.0
H A:ILE93 4.8 0.0 1.0
C A:CYS90 4.9 0.0 1.0
HA A:LEU141 5.0 0.0 1.0
HD1 A:HIS136 5.0 0.0 1.0
CB A:PHE142 5.0 0.0 1.0
HD1 A:HIS132 5.0 0.0 1.0

Reference:

F.Dardel, S.Ragusa, C.Lazennec, S.Blanquet, T.Meinnel. Solution Structure of Nickel-Peptide Deformylase. J.Mol.Biol. V. 280 501 1998.
ISSN: ISSN 0022-2836
PubMed: 9665852
DOI: 10.1006/JMBI.1998.1882
Page generated: Wed Dec 16 01:17:41 2020

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