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Nickel in PDB 2f22: Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution, PDB code: 2f22 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.59 / 1.42
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.358, 77.705, 80.152, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution (pdb code 2f22). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution, PDB code: 2f22:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 2f22

Go back to Nickel Binding Sites List in 2f22
Nickel binding site 1 out of 2 in the Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni144

b:10.0
occ:1.00
NE2 A:HIS118 2.0 6.2 1.0
O A:HOH181 2.0 16.5 1.0
NE2 A:HIS114 2.1 7.5 1.0
NE2 A:HIS42 2.1 4.5 1.0
O A:HOH220 2.4 16.8 1.0
O A:HOH195 2.4 20.1 1.0
CE1 A:HIS118 3.0 8.0 1.0
CE1 A:HIS42 3.0 6.0 1.0
CE1 A:HIS114 3.0 5.1 1.0
CD2 A:HIS114 3.0 9.2 1.0
CD2 A:HIS118 3.0 5.0 1.0
CD2 A:HIS42 3.1 3.9 1.0
ND1 A:HIS118 4.1 8.1 1.0
ND1 A:HIS114 4.1 8.0 1.0
ND1 A:HIS42 4.1 5.4 1.0
CG A:HIS114 4.2 6.2 1.0
CG A:HIS118 4.2 4.3 1.0
O A:HOH364 4.2 39.5 1.0
CG A:HIS42 4.2 3.0 1.0
O A:HOH361 4.4 33.9 1.0
O A:HOH366 4.5 37.4 1.0
CG2 A:VAL46 4.9 3.3 1.0
O A:HOH197 4.9 27.0 1.0

Nickel binding site 2 out of 2 in 2f22

Go back to Nickel Binding Sites List in 2f22
Nickel binding site 2 out of 2 in the Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of A Putative Dna Damage-Inducable (Dinb) Protein (BH3987) From Bacillus Halodurans at 1.42 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni144

b:10.2
occ:1.00
NE2 B:HIS118 2.0 5.9 1.0
NE2 B:HIS114 2.1 5.0 1.0
NE2 B:HIS42 2.1 4.3 1.0
O B:HOH195 2.1 15.6 1.0
O B:HOH196 2.2 16.2 1.0
O B:HOH192 2.3 16.4 1.0
CE1 B:HIS118 2.9 7.2 1.0
CE1 B:HIS42 3.0 6.5 1.0
CD2 B:HIS114 3.0 6.0 1.0
CD2 B:HIS118 3.0 4.3 1.0
CE1 B:HIS114 3.1 5.5 1.0
CD2 B:HIS42 3.1 4.7 1.0
O B:HOH322 4.0 47.3 1.0
ND1 B:HIS118 4.1 8.7 1.0
ND1 B:HIS42 4.1 6.3 1.0
CG B:HIS118 4.2 3.8 1.0
CG B:HIS114 4.2 3.8 1.0
ND1 B:HIS114 4.2 6.9 1.0
CG B:HIS42 4.2 3.0 1.0
O B:HOH261 4.5 32.6 1.0
O B:HOH248 4.9 30.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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