Chemical elements
  Nickel
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    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
      2cqz
      2d58
      2def
      2dro
      2drq
      2drr
      2drs
      2eaq
      2eav
      2esu
      2et2
      2etv
      2f22
      2f9m
      2fcp
      2ff2
      2fff
      2fg9
      2fj1
      2frv
      2fwe
      2g1l
      2ga0
      2ggt
      2gk2
      2glz
      2gqk
      2gql
      2gu3
      2gw3
      2gw4
      2gzx
      2h9j
      2h9k
      2hje
      2hkv
      2hza
      2hzv
      2hzy
      2i2o
      2idf
      2ilt
      2isg
      2isy
      2isz
      2it0
      2iwb
      2ixl
      2j5s
      2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Crystal Structure Analysis of Tet Repressor (Class D) in Complex With 7-Chlortetracycline-Nickel(II) (pdb 2fj1)






The binding sites of Nickel atom in the structure of Crystal Structure Analysis of Tet Repressor (Class D) in Complex With 7-Chlortetracycline-Nickel(II) (pdb code 2fj1). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 2fj1 structure was solved by P.ORTH, W.SAENGER, G.J.PALM, W.HINRICHS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)64.5-2.2
Space groupI4122
a (A)68.937
b (A)68.937
c (A)180.893
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)14.6
Rfree (%)21.5


Nickel Binding Sites:

Nickel binding site 1 out of 1 in 2fj1


Nickel binding site 1 out of 1 in 2fj1
Click to enlarge
stereopicture of Nickel binding site 1 out of 1 in 2fj1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 2fj1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His100, A: Thr103, A: Ctc222, A: Hoh224, A: Hoh225, A: Hoh226, A: Hoh305, A: Hoh327,

conact list:


AtomAtomDistance (A)
NiO A:His1004.94
NiNE2 A:His1002.08
NiND1 A:His1004.19
NiCD2 A:His1003.02
NiCE1 A:His1003.09
NiCG A:His1004.19
NiO A:Thr1034.24
NiOG1 A:Thr1034.02
NiC A:Thr1034.77
NiC11 A:Ctc2222.97
NiO1 A:Ctc2224.82
NiO10 A:Ctc2224.08
NiC4B A:Ctc2224.22
NiC10 A:Ctc2224.62
NiC5B A:Ctc2223.33
NiO12 A:Ctc2221.96
NiC12 A:Ctc2222.90
NiC6B A:Ctc2224.25
NiC5A A:Ctc2224.78
NiO11 A:Ctc2222.01
NiO4B A:Ctc2224.31
NiO A:Hoh2242.16
NiO A:Hoh2252.22
NiO A:Hoh2262.22
NiO A:Hoh3053.80
NiO A:Hoh3274.04

interactive model:




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