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Nickel in PDB 2fwe: Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)

Enzymatic activity of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)

All present enzymatic activity of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form):
1.8.1.8;

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form), PDB code: 2fwe was solved by C.U.Stirnimann, A.Rozhkova, U.Grauschopf, R.A.Boeckmann, R.Glockshuber, G.Capitani, M.G.Gruetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.265, 45.961, 73.768, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 23.5

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form) (pdb code 2fwe). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form), PDB code: 2fwe:

Nickel binding site 1 out of 1 in 2fwe

Go back to Nickel Binding Sites List in 2fwe
Nickel binding site 1 out of 1 in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1050

b:19.9
occ:0.40
OD2 A:ASP483 1.7 27.6 0.5
NE2 A:HIS547 2.3 42.6 1.0
NE2 A:HIS548 2.4 44.2 1.0
CE1 A:HIS548 2.6 46.2 1.0
CE1 A:HIS547 2.6 46.3 1.0
CG A:ASP483 2.7 16.3 0.5
OD1 A:ASP483 3.1 20.9 0.5
CD2 A:HIS547 3.4 45.0 1.0
CD2 A:HIS548 3.4 49.5 1.0
ND1 A:HIS548 3.6 54.5 1.0
ND1 A:HIS547 3.8 45.1 1.0
CG A:HIS548 4.0 52.2 1.0
CB A:ASP483 4.1 13.2 1.0
O A:HOH21 4.1 23.7 1.0
CG A:HIS547 4.2 41.9 1.0

Reference:

C.U.Stirnimann, A.Rozhkova, U.Grauschopf, R.A.Boeckmann, R.Glockshuber, G.Capitani, M.G.Gruetter. High-Resolution Structures of Escherichia Coli Cdsbd in Different Redox States: A Combined Crystallographic, Biochemical and Computational Study J.Mol.Biol. V. 358 829 2006.
ISSN: ISSN 0022-2836
PubMed: 16545842
DOI: 10.1016/J.JMB.2006.02.030
Page generated: Fri Sep 25 08:08:44 2020
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