Atomistry » Nickel » PDB 2c21-2gw3 » 2fwe
Atomistry »
  Nickel »
    PDB 2c21-2gw3 »
      2fwe »

Nickel in PDB 2fwe: Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)

Enzymatic activity of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)

All present enzymatic activity of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form):
1.8.1.8;

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form), PDB code: 2fwe was solved by C.U.Stirnimann, A.Rozhkova, U.Grauschopf, R.A.Boeckmann, R.Glockshuber, G.Capitani, M.G.Gruetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.265, 45.961, 73.768, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 23.5

Other elements in 2fwe:

The structure of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form) also contains other interesting chemical elements:

Iodine (I) 11 atoms
Sodium (Na) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form) (pdb code 2fwe). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form), PDB code: 2fwe:

Nickel binding site 1 out of 1 in 2fwe

Go back to Nickel Binding Sites List in 2fwe
Nickel binding site 1 out of 1 in the Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the C-Terminal Domain of the Electron Transfer Catalyst Dsbd (Oxidized Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1050

b:19.9
occ:0.40
OD2 A:ASP483 1.7 27.6 0.5
NE2 A:HIS547 2.3 42.6 1.0
NE2 A:HIS548 2.4 44.2 1.0
CE1 A:HIS548 2.6 46.2 1.0
CE1 A:HIS547 2.6 46.3 1.0
CG A:ASP483 2.7 16.3 0.5
OD1 A:ASP483 3.1 20.9 0.5
CD2 A:HIS547 3.4 45.0 1.0
CD2 A:HIS548 3.4 49.5 1.0
ND1 A:HIS548 3.6 54.5 1.0
ND1 A:HIS547 3.8 45.1 1.0
CG A:HIS548 4.0 52.2 1.0
CB A:ASP483 4.1 13.2 1.0
O A:HOH21 4.1 23.7 1.0
CG A:HIS547 4.2 41.9 1.0

Reference:

C.U.Stirnimann, A.Rozhkova, U.Grauschopf, R.A.Boeckmann, R.Glockshuber, G.Capitani, M.G.Gruetter. High-Resolution Structures of Escherichia Coli Cdsbd in Different Redox States: A Combined Crystallographic, Biochemical and Computational Study J.Mol.Biol. V. 358 829 2006.
ISSN: ISSN 0022-2836
PubMed: 16545842
DOI: 10.1016/J.JMB.2006.02.030
Page generated: Wed Oct 9 16:43:46 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy