Nickel in PDB 2ggt: Crystal Structure of Human SCO1 Complexed with Nickel.

The structure of Crystal Structure of Human SCO1 Complexed with Nickel., PDB code: 2ggt was solved by L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, M.Martinelli, P.Palumaa, S.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.74 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.461, 52.444, 136.411, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 31.8

The structure of Crystal Structure of Human SCO1 Complexed with Nickel. also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Nickel atom in the Crystal Structure of Human SCO1 Complexed with Nickel. (pdb code 2ggt). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Human SCO1 Complexed with Nickel., PDB code: 2ggt:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Human SCO1 Complexed with Nickel.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human SCO1 Complexed with Nickel. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni299 b:33.2 occ:1.00 SG A:CYS173 2.0 31.6 1.0 NE2 A:HIS260 2.0 21.4 1.0 SG A:CYS169 2.2 37.5 1.0 CL A:CL300 2.7 46.5 1.0 CE1 A:HIS260 2.9 12.2 1.0 CD2 A:HIS260 3.0 11.9 1.0 CE2 A:PHE166 3.4 24.1 1.0 CD2 A:PHE166 3.7 32.4 1.0 CB A:CYS169 3.7 36.8 1.0 CB A:CYS173 3.9 26.1 1.0 ND1 A:HIS260 4.0 23.9 1.0 N A:CYS173 4.1 27.5 1.0 CG A:HIS260 4.1 14.9 1.0 CB A:VAL172 4.2 29.9 1.0 OH A:TYR163 4.3 27.2 1.0 CZ A:PHE166 4.4 30.8 1.0 CA A:CYS173 4.5 28.3 1.0 N A:PHE166 4.7 29.7 1.0 CG1 A:VAL172 4.7 27.8 1.0 CA A:CYS169 4.7 38.2 1.0 CA A:GLY165 4.8 25.2 1.0 O A:VAL258 4.8 31.4 1.0 CG2 A:VAL172 4.9 30.5 1.0 C A:VAL172 4.9 28.7 1.0 CG A:PHE166 4.9 31.7 1.0 CA A:VAL172 4.9 29.8 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Human SCO1 Complexed with Nickel.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Human SCO1 Complexed with Nickel. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni299 b:40.0 occ:1.00 SG B:CYS173 2.1 37.0 1.0 SG B:CYS169 2.1 47.8 1.0 CL B:CL301 2.1 40.6 1.0 NE2 B:HIS260 2.4 38.8 1.0 CD2 B:HIS260 3.2 38.9 1.0 CE1 B:HIS260 3.3 36.2 1.0 CE2 B:PHE166 3.7 41.6 1.0 CB B:CYS169 3.8 46.2 1.0 CB B:CYS173 3.8 42.7 1.0 N B:CYS173 3.8 46.1 1.0 CD2 B:PHE166 4.1 41.8 1.0 OH B:TYR163 4.2 24.9 1.0 CB B:VAL172 4.2 49.8 1.0 CG B:HIS260 4.3 38.3 1.0 ND1 B:HIS260 4.3 39.2 1.0 CA B:CYS173 4.3 44.7 1.0 C B:VAL172 4.4 47.8 1.0 CG1 B:VAL172 4.6 48.2 1.0 CA B:VAL172 4.6 49.4 1.0 CA B:CYS169 4.6 48.5 1.0 O B:VAL258 4.7 47.7 1.0 CZ B:PHE166 4.8 44.6 1.0 N B:VAL172 4.9 51.6 1.0 CA B:GLY165 4.9 35.9 1.0

L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, M.Martinelli, P.Palumaa, S.Wang. A Hint For the Function of Human SCO1 From Different Structures. Proc.Natl.Acad.Sci.Usa V. 103 8595 2006.
ISSN: ISSN 0027-8424
PubMed: 16735468
DOI: 10.1073/PNAS.0601375103