Atomistry » Nickel » PDB 2c21-2gw3 » 2ggt
Atomistry »
  Nickel »
    PDB 2c21-2gw3 »
      2ggt »

Nickel in PDB 2ggt: Crystal Structure of Human SCO1 Complexed with Nickel.

Protein crystallography data

The structure of Crystal Structure of Human SCO1 Complexed with Nickel., PDB code: 2ggt was solved by L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, M.Martinelli, P.Palumaa, S.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.74 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.461, 52.444, 136.411, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 31.8

Other elements in 2ggt:

The structure of Crystal Structure of Human SCO1 Complexed with Nickel. also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Human SCO1 Complexed with Nickel. (pdb code 2ggt). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Human SCO1 Complexed with Nickel., PDB code: 2ggt:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 2ggt

Go back to Nickel Binding Sites List in 2ggt
Nickel binding site 1 out of 2 in the Crystal Structure of Human SCO1 Complexed with Nickel.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human SCO1 Complexed with Nickel. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni299

b:33.2
occ:1.00
SG A:CYS173 2.0 31.6 1.0
NE2 A:HIS260 2.0 21.4 1.0
SG A:CYS169 2.2 37.5 1.0
CL A:CL300 2.7 46.5 1.0
CE1 A:HIS260 2.9 12.2 1.0
CD2 A:HIS260 3.0 11.9 1.0
CE2 A:PHE166 3.4 24.1 1.0
CD2 A:PHE166 3.7 32.4 1.0
CB A:CYS169 3.7 36.8 1.0
CB A:CYS173 3.9 26.1 1.0
ND1 A:HIS260 4.0 23.9 1.0
N A:CYS173 4.1 27.5 1.0
CG A:HIS260 4.1 14.9 1.0
CB A:VAL172 4.2 29.9 1.0
OH A:TYR163 4.3 27.2 1.0
CZ A:PHE166 4.4 30.8 1.0
CA A:CYS173 4.5 28.3 1.0
N A:PHE166 4.7 29.7 1.0
CG1 A:VAL172 4.7 27.8 1.0
CA A:CYS169 4.7 38.2 1.0
CA A:GLY165 4.8 25.2 1.0
O A:VAL258 4.8 31.4 1.0
CG2 A:VAL172 4.9 30.5 1.0
C A:VAL172 4.9 28.7 1.0
CG A:PHE166 4.9 31.7 1.0
CA A:VAL172 4.9 29.8 1.0

Nickel binding site 2 out of 2 in 2ggt

Go back to Nickel Binding Sites List in 2ggt
Nickel binding site 2 out of 2 in the Crystal Structure of Human SCO1 Complexed with Nickel.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Human SCO1 Complexed with Nickel. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni299

b:40.0
occ:1.00
SG B:CYS173 2.1 37.0 1.0
SG B:CYS169 2.1 47.8 1.0
CL B:CL301 2.1 40.6 1.0
NE2 B:HIS260 2.4 38.8 1.0
CD2 B:HIS260 3.2 38.9 1.0
CE1 B:HIS260 3.3 36.2 1.0
CE2 B:PHE166 3.7 41.6 1.0
CB B:CYS169 3.8 46.2 1.0
CB B:CYS173 3.8 42.7 1.0
N B:CYS173 3.8 46.1 1.0
CD2 B:PHE166 4.1 41.8 1.0
OH B:TYR163 4.2 24.9 1.0
CB B:VAL172 4.2 49.8 1.0
CG B:HIS260 4.3 38.3 1.0
ND1 B:HIS260 4.3 39.2 1.0
CA B:CYS173 4.3 44.7 1.0
C B:VAL172 4.4 47.8 1.0
CG1 B:VAL172 4.6 48.2 1.0
CA B:VAL172 4.6 49.4 1.0
CA B:CYS169 4.6 48.5 1.0
O B:VAL258 4.7 47.7 1.0
CZ B:PHE166 4.8 44.6 1.0
N B:VAL172 4.9 51.6 1.0
CA B:GLY165 4.9 35.9 1.0

Reference:

L.Banci, I.Bertini, V.Calderone, S.Ciofi-Baffoni, S.Mangani, M.Martinelli, P.Palumaa, S.Wang. A Hint For the Function of Human SCO1 From Different Structures. Proc.Natl.Acad.Sci.Usa V. 103 8595 2006.
ISSN: ISSN 0027-8424
PubMed: 16735468
DOI: 10.1073/PNAS.0601375103
Page generated: Wed Dec 16 01:18:11 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy