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Nickel in PDB 2gu3: Ypmb Protein From Bacillus Subtilis

Protein crystallography data

The structure of Ypmb Protein From Bacillus Subtilis, PDB code: 2gu3 was solved by J.Osipiuk, N.Maltseva, I.Dementieva, S.Moy, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.30 / 1.74
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.200, 52.415, 55.079, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Ypmb Protein From Bacillus Subtilis (pdb code 2gu3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Ypmb Protein From Bacillus Subtilis, PDB code: 2gu3:

Nickel binding site 1 out of 1 in 2gu3

Go back to Nickel Binding Sites List in 2gu3
Nickel binding site 1 out of 1 in the Ypmb Protein From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ypmb Protein From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:19.5
occ:0.80
O A:HOH295 1.8 13.6 1.0
O A:HOH264 2.2 31.9 1.0
NE2 A:HIS53 2.2 18.2 1.0
O A:HOH268 2.3 26.0 1.0
CD2 A:HIS53 3.1 18.0 1.0
CE1 A:HIS53 3.2 13.8 1.0
O A:LYS74 4.0 27.1 1.0
ND1 A:HIS53 4.3 15.8 1.0
CG A:HIS53 4.3 18.0 1.0
CA A:LYS74 4.5 26.0 1.0
C A:LYS74 4.6 26.4 1.0
O A:ASP73 4.7 22.4 1.0

Reference:

J.Osipiuk, N.Maltseva, I.Dementieva, S.Moy, A.Joachimiak. X-Ray Crystal Structure of Ypmb Protein From Bacillus Subtilis. To Be Published.
Page generated: Thu Oct 29 06:17:12 2020
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