Nickel in PDB 2gzx: Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237.

The structure of Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237., PDB code: 2gzx was solved by S.M.Vorobiev, H.Neely, J.Seetharaman, D.Wang, Y.Fang, R.Xiao, T.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.79 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.678, 77.324, 76.129, 90.00, 98.01, 90.00
R / Rfree (%)	25.8 / 28.6

The binding sites of Nickel atom in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. (pdb code 2gzx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237., PDB code: 2gzx:
Jump to Nickel binding site number: 1; 2; 3; 4;

Nickel binding site 1 out of 4 in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni299 b:22.1 occ:1.00 O A:HOH374 2.1 25.5 1.0 NE2 A:HIS153 2.3 13.2 1.0 OE2 A:GLU92 2.4 16.6 1.0 ND1 A:HIS128 2.4 15.3 1.0 CE1 A:HIS128 2.8 17.8 1.0 CE1 A:HIS153 2.9 12.6 1.0 O A:HOH314 3.0 21.4 1.0 NI A:NI300 3.2 15.3 1.0 OD2 A:ASP204 3.5 22.7 1.0 CD A:GLU92 3.5 22.1 1.0 CD2 A:HIS153 3.6 14.0 1.0 CG A:HIS128 3.8 17.6 1.0 OD1 A:ASP204 4.0 15.0 1.0 OE1 A:GLU92 4.0 19.3 1.0 CG A:ASP204 4.1 18.3 1.0 NE2 A:HIS128 4.1 18.7 1.0 NE2 A:HIS6 4.2 12.4 1.0 ND1 A:HIS153 4.2 13.9 1.0 CB A:HIS128 4.5 14.2 1.0 CG A:HIS153 4.5 13.7 1.0 CD2 A:HIS128 4.6 18.0 1.0 CE1 A:HIS6 4.8 8.9 1.0 CG A:GLU92 4.9 24.0 1.0 NE2 A:HIS63 4.9 15.2 1.0

Nickel binding site 2 out of 4 in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni300 b:15.3 occ:1.00 NE2 A:HIS6 2.1 12.4 1.0 NE2 A:HIS8 2.2 16.8 1.0 OD1 A:ASP204 2.4 15.0 1.0 OE1 A:GLU92 2.8 19.3 1.0 CE1 A:HIS8 3.1 18.7 1.0 CD2 A:HIS6 3.1 10.5 1.0 CE1 A:HIS6 3.1 8.9 1.0 NI A:NI299 3.2 22.1 1.0 OE2 A:GLU92 3.3 16.6 1.0 CD2 A:HIS8 3.3 15.8 1.0 CD A:GLU92 3.4 22.1 1.0 CG A:ASP204 3.4 18.3 1.0 O A:HOH314 3.6 21.4 1.0 OD2 A:ASP204 3.8 22.7 1.0 CE1 A:HIS153 3.8 12.6 1.0 NE2 A:HIS153 3.8 13.2 1.0 ND1 A:HIS6 4.2 10.7 1.0 CG A:HIS6 4.2 13.2 1.0 ND1 A:HIS8 4.3 17.5 1.0 CG A:HIS8 4.4 17.3 1.0 CB A:ASP204 4.6 16.8 1.0 CG A:GLU92 4.7 24.0 1.0 CB A:GLU92 4.7 24.3 1.0 ND1 A:HIS153 4.8 13.9 1.0 CD2 A:HIS153 4.8 14.0 1.0 ND1 A:HIS128 5.0 15.3 1.0

Nickel binding site 3 out of 4 in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni297 b:21.1 occ:1.00 NE2 B:HIS6 2.1 19.7 1.0 NE2 B:HIS8 2.3 20.3 1.0 OE1 B:GLU92 2.6 21.1 1.0 OD2 B:ASP204 2.8 37.8 1.0 CD2 B:HIS6 3.1 18.1 1.0 CE1 B:HIS6 3.1 19.0 1.0 OE2 B:GLU92 3.1 20.3 1.0 CD2 B:HIS8 3.2 17.7 1.0 CD B:GLU92 3.2 24.6 1.0 CE1 B:HIS8 3.3 22.7 1.0 NI B:NI298 3.5 30.2 1.0 CE1 B:HIS153 3.7 13.9 1.0 CG B:ASP204 3.9 38.8 1.0 NE2 B:HIS153 4.1 14.1 1.0 ND1 B:HIS6 4.2 17.7 1.0 OD1 B:ASP204 4.2 41.8 1.0 CG B:HIS6 4.2 18.4 1.0 CG B:HIS8 4.4 20.5 1.0 ND1 B:HIS8 4.4 23.2 1.0 CG B:GLU92 4.6 26.9 1.0 ND1 B:HIS153 4.7 14.8 1.0 CB B:GLU92 4.8 27.5 1.0

Nickel binding site 4 out of 4 in the Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni298 b:30.2 occ:1.00 OE2 B:GLU92 2.5 20.3 1.0 ND1 B:HIS128 2.5 21.0 1.0 NE2 B:HIS153 2.7 14.1 1.0 CE1 B:HIS128 2.9 22.1 1.0 CE1 B:HIS153 3.2 13.9 1.0 NI B:NI297 3.5 21.1 1.0 CD B:GLU92 3.7 24.6 1.0 OD2 B:ASP204 3.8 37.8 1.0 OD1 B:ASP204 3.8 41.8 1.0 CG B:HIS128 3.8 21.0 1.0 CD2 B:HIS153 4.0 11.9 1.0 CG B:ASP204 4.1 38.8 1.0 NE2 B:HIS128 4.2 23.0 1.0 OE1 B:GLU92 4.2 21.1 1.0 ND1 B:HIS153 4.5 14.8 1.0 CB B:HIS128 4.6 17.9 1.0 NE2 B:HIS6 4.6 19.7 1.0 CD2 B:HIS128 4.7 21.9 1.0 CG B:HIS153 4.9 13.9 1.0 CG B:GLU92 4.9 26.9 1.0

S.M.Vorobiev, H.Neely, J.Seetharaman, D.Wang, Y.Fang, R.Xiao, T.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the Tatd Deoxyribonuclease MW0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target ZR237. To Be Published.