Nickel in PDB 2i2o: Crystal Structure of An EIF4G-Like Protein From Danio Rerio

The structure of Crystal Structure of An EIF4G-Like Protein From Danio Rerio, PDB code: 2i2o was solved by E.Bitto, G.E.Wesenberg, G.N.Phillips Jr., J.G.Mccoy, C.A.Bingman, Centerfor Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.61 / 1.92
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	317.796, 40.948, 40.917, 90.00, 90.26, 90.00
R / Rfree (%)	19 / 23.5

The binding sites of Nickel atom in the Crystal Structure of An EIF4G-Like Protein From Danio Rerio (pdb code 2i2o). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of An EIF4G-Like Protein From Danio Rerio, PDB code: 2i2o:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of An EIF4G-Like Protein From Danio Rerio


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of An EIF4G-Like Protein From Danio Rerio within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni502 b:20.8 occ:0.50 OD1 A:ASN119 1.8 22.6 1.0 O A:ASN119 2.4 16.4 1.0 CG A:ASN119 2.8 19.8 1.0 C A:ASN119 2.9 15.6 1.0 CB A:ASN119 3.3 17.7 1.0 CA A:ASN119 3.6 16.6 1.0 N A:MSE120 3.6 13.3 1.0 OD1 A:ASN118 3.9 24.8 1.0 ND2 A:ASN119 4.0 20.9 1.0 CA A:MSE120 4.2 10.7 1.0 N A:ASN119 4.2 17.2 1.0 O A:HOH678 4.3 12.2 1.0 O A:HOH523 4.6 12.8 1.0 CD A:PRO121 4.7 9.3 1.0 O A:HOH508 4.9 4.7 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of An EIF4G-Like Protein From Danio Rerio


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of An EIF4G-Like Protein From Danio Rerio within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni501 b:17.4 occ:0.50 OD1 B:ASN119 1.7 22.4 1.0 O B:ASN119 2.4 16.7 1.0 CG B:ASN119 2.8 19.7 1.0 C B:ASN119 3.0 15.8 1.0 CB B:ASN119 3.5 17.6 1.0 N B:MSE120 3.7 13.4 1.0 CA B:ASN119 3.8 16.6 1.0 ND2 B:ASN119 4.0 20.0 1.0 O B:HOH611 4.0 20.6 1.0 CA B:MSE120 4.1 10.9 1.0 N B:ASN119 4.3 17.5 1.0 O B:HOH619 4.3 11.8 1.0 O B:HOH521 4.4 11.1 1.0 CD B:PRO121 4.4 8.5 1.0 ND2 B:ASN118 4.6 21.5 1.0

E.Bae, E.Bitto, C.A.Bingman, J.G.Mccoy, G.E.Wesenberg, G.N.Phillips. Crystal Structure of An EIF4G-Like Protein From Danio Rerio. Proteins V. 78 1803 2010.
ISSN: ISSN 0887-3585
PubMed: 20229607
DOI: 10.1002/PROT.22703