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Nickel in PDB 2kkd: uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin

Nickel Binding Sites:

The binding sites of Nickel atom in the uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin (pdb code 2kkd). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin, PDB code: 2kkd:

Nickel binding site 1 out of 1 in 2kkd

Go back to Nickel Binding Sites List in 2kkd
Nickel binding site 1 out of 1 in the uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of uc(Nmr) Structure of Ni Substitued Desulfovibrio Vulgaris Rubredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni53

b:0.0
occ:1.00
SG A:CYS42 2.4 0.0 1.0
SG A:CYS9 2.4 0.0 1.0
SG A:CYS39 2.4 0.0 1.0
SG A:CYS6 2.4 0.0 1.0
H A:CYS9 3.0 0.0 1.0
HB3 A:CYS42 3.0 0.0 1.0
HB3 A:CYS39 3.1 0.0 1.0
HB3 A:CYS9 3.1 0.0 1.0
H A:GLY10 3.2 0.0 1.0
HB3 A:CYS6 3.3 0.0 1.0
HB A:VAL8 3.3 0.0 1.0
CB A:CYS6 3.3 0.0 1.0
CB A:CYS39 3.3 0.0 1.0
CB A:CYS9 3.3 0.0 1.0
CB A:CYS42 3.3 0.0 1.0
H A:CYS42 3.4 0.0 1.0
HB2 A:CYS6 3.4 0.0 1.0
HB1 A:ALA44 3.5 0.0 1.0
HB2 A:CYS39 3.6 0.0 1.0
N A:CYS9 3.6 0.0 1.0
HB A:VAL41 3.7 0.0 1.0
H A:GLY43 3.7 0.0 1.0
HB3 A:ALA44 3.8 0.0 1.0
N A:CYS42 4.0 0.0 1.0
HB3 A:TYR11 4.0 0.0 1.0
CA A:CYS9 4.0 0.0 1.0
N A:GLY10 4.1 0.0 1.0
HB2 A:CYS42 4.2 0.0 1.0
CB A:ALA44 4.2 0.0 1.0
CA A:CYS42 4.2 0.0 1.0
H A:ALA44 4.2 0.0 1.0
HB2 A:CYS9 4.2 0.0 1.0
H A:VAL8 4.3 0.0 1.0
CB A:VAL8 4.4 0.0 1.0
HB2 A:TYR11 4.5 0.0 1.0
HG13 A:VAL8 4.5 0.0 1.0
N A:GLY43 4.5 0.0 1.0
C A:VAL8 4.6 0.0 1.0
C A:CYS9 4.6 0.0 1.0
H A:TYR11 4.6 0.0 1.0
H A:VAL41 4.7 0.0 1.0
CA A:CYS39 4.7 0.0 1.0
CB A:VAL41 4.7 0.0 1.0
N A:ALA44 4.7 0.0 1.0
O A:CYS39 4.8 0.0 1.0
CB A:TYR11 4.8 0.0 1.0
HG11 A:VAL41 4.8 0.0 1.0
CA A:CYS6 4.8 0.0 1.0
CA A:VAL8 4.9 0.0 1.0
N A:VAL8 4.9 0.0 1.0
C A:CYS42 4.9 0.0 1.0
HA A:CYS9 4.9 0.0 1.0
C A:VAL41 4.9 0.0 1.0
HG21 A:VAL8 5.0 0.0 1.0
HB2 A:ALA44 5.0 0.0 1.0
N A:TYR11 5.0 0.0 1.0

Reference:

B.J.Goodfellow, I.C.Duarte, A.L.Macedo, B.F.Volkman, S.G.Nunes, I.Moura, J.L.Markley, J.J.Moura. An uc(Nmr) Structural Study of Nickel-Substituted Rubredoxin J.Biol.Inorg.Chem. V. 15 409 2010.
ISSN: ISSN 0949-8257
PubMed: 19997764
DOI: 10.1007/S00775-009-0613-6
Page generated: Fri Sep 25 08:12:02 2020
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