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Nickel in PDB 2nqc: Crystal Structure of Ig-Like Domain 23 From Human Filamin C

Protein crystallography data

The structure of Crystal Structure of Ig-Like Domain 23 From Human Filamin C, PDB code: 2nqc was solved by L.Sjekloca, R.Pudas, B.Sjoeblom, P.Konarev, O.Carugo, V.Rybin, T.R.Kiema, D.Svergun, J.Ylanne, K.Djinovic-Carugo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.17 / 2.05
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 52.141, 52.141, 69.216, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 23.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Ig-Like Domain 23 From Human Filamin C (pdb code 2nqc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Ig-Like Domain 23 From Human Filamin C, PDB code: 2nqc:

Nickel binding site 1 out of 1 in 2nqc

Go back to Nickel Binding Sites List in 2nqc
Nickel binding site 1 out of 1 in the Crystal Structure of Ig-Like Domain 23 From Human Filamin C


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Ig-Like Domain 23 From Human Filamin C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni101

b:36.1
occ:1.00
N1 A:IMD201 1.9 35.0 1.0
N3 A:IMD301 2.0 40.4 1.0
ND1 A:HIS2539 2.2 39.1 1.0
SG A:CYS2532 2.3 36.9 1.0
C2 A:IMD201 2.8 37.9 1.0
C4 A:IMD301 2.9 39.1 1.0
C5 A:IMD201 3.0 37.9 1.0
C2 A:IMD301 3.1 40.0 1.0
CE1 A:HIS2539 3.1 36.8 1.0
CG A:HIS2539 3.2 37.2 1.0
CB A:CYS2532 3.3 38.8 1.0
CB A:HIS2539 3.5 37.0 1.0
N3 A:IMD201 3.9 40.2 1.0
C5 A:IMD301 4.1 40.2 1.0
C4 A:IMD201 4.1 38.4 1.0
N1 A:IMD301 4.1 39.2 1.0
NE2 A:HIS2539 4.2 35.9 1.0
CD2 A:HIS2539 4.3 38.2 1.0
CA A:HIS2539 4.3 38.1 1.0
CA A:CYS2532 4.6 39.2 1.0
CD2 A:LEU2518 4.6 39.3 1.0
C A:CYS2532 4.6 40.4 1.0
O A:CYS2532 4.8 40.1 1.0

Reference:

L.Sjekloca, R.Pudas, B.Sjoeblom, P.Konarev, O.Carugo, V.Rybin, T.R.Kiema, D.Svergun, J.Ylanne, K.Djinovic-Carugo. Crystal Structure of Human Filamin C Domain 23 and Small Angle Scattering Model For Filamin C 23-24 Dimer J.Mol.Biol. V. 368 1011 2007.
ISSN: ISSN 0022-2836
PubMed: 17379241
DOI: 10.1016/J.JMB.2007.02.018
Page generated: Thu Oct 29 06:17:37 2020
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