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Nickel in PDB 2o97: Crystal Structure of E. Coli Hu Heterodimer

Protein crystallography data

The structure of Crystal Structure of E. Coli Hu Heterodimer, PDB code: 2o97 was solved by F.Guo, S.Adhya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.45
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 82.915, 82.915, 61.048, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 26.4

Other elements in 2o97:

The structure of Crystal Structure of E. Coli Hu Heterodimer also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of E. Coli Hu Heterodimer (pdb code 2o97). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of E. Coli Hu Heterodimer, PDB code: 2o97:

Nickel binding site 1 out of 1 in 2o97

Go back to Nickel Binding Sites List in 2o97
Nickel binding site 1 out of 1 in the Crystal Structure of E. Coli Hu Heterodimer


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of E. Coli Hu Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni101

b:53.8
occ:1.00
N A:MET1 2.0 47.0 1.0
O B:HOH109 2.2 42.7 1.0
OD1 B:ASP40 2.3 49.2 1.0
O B:HOH110 2.3 40.2 1.0
O B:HOH108 2.3 49.2 1.0
CG B:ASP40 3.0 48.2 1.0
OD2 B:ASP40 3.0 47.8 1.0
CA A:MET1 3.2 48.5 1.0
O B:ASP41 3.8 48.8 1.0
C A:MET1 4.1 47.6 1.0
CB A:MET1 4.3 48.2 1.0
O A:MET1 4.4 48.2 1.0
CB B:ASP40 4.4 46.7 1.0
CL B:CL102 4.6 60.2 1.0
OE1 A:GLN5 4.6 53.9 1.0
N B:ASP41 4.8 47.4 1.0
C B:ASP41 4.9 48.2 1.0
N A:ASN2 4.9 47.2 1.0
C B:ASP40 5.0 46.7 1.0
CA B:ASP40 5.0 46.6 1.0

Reference:

F.Guo, S.Adhya. Spiral Structure of Escherichia Coli Hu{Alpha}Beta Provides Foundation For Dna Supercoiling. Proc.Natl.Acad.Sci.Usa V. 104 4309 2007.
ISSN: ISSN 0027-8424
PubMed: 17360520
DOI: 10.1073/PNAS.0611686104
Page generated: Thu Oct 29 06:17:39 2020
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