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Nickel in PDB 2os0: Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes

Enzymatic activity of Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes

All present enzymatic activity of Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes:
3.5.1.88;

Protein crystallography data

The structure of Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes, PDB code: 2os0 was solved by E.E.Kim, K.-H.Kim, J.H.Moon, K.Choi, H.K.Lee, H.S.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.03 / 1.30
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 67.875, 67.875, 41.084, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 20.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes (pdb code 2os0). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes, PDB code: 2os0:

Nickel binding site 1 out of 1 in 2os0

Go back to Nickel Binding Sites List in 2os0
Nickel binding site 1 out of 1 in the Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni400

b:13.7
occ:1.00
NE2 A:HIS161 2.1 6.3 1.0
O A:HOH511 2.1 10.5 1.0
NE2 A:HIS157 2.2 8.4 1.0
SG A:CYS114 2.4 8.9 1.0
CD2 A:HIS157 3.0 8.0 1.0
CD2 A:HIS161 3.0 6.4 1.0
CE1 A:HIS161 3.1 6.5 1.0
CE1 A:HIS157 3.3 8.8 1.0
CB A:CYS114 3.5 8.5 1.0
O A:HOH509 3.5 8.8 1.0
O A:HOH565 3.6 18.0 1.0
NE2 A:GLN65 3.6 7.2 1.0
OE1 A:GLN65 3.9 7.2 1.0
CD A:GLN65 4.0 6.3 1.0
OE2 A:GLU158 4.1 10.8 1.0
CA A:CYS114 4.1 9.2 1.0
ND1 A:HIS161 4.2 6.8 1.0
CG A:HIS161 4.2 5.0 1.0
CG A:HIS157 4.2 7.8 1.0
ND1 A:HIS157 4.3 9.0 1.0
O A:HOH502 4.4 7.2 1.0
OE1 A:GLU158 4.7 11.3 1.0
O A:GLY113 4.7 12.1 1.0
CD A:GLU158 4.8 10.0 1.0
N A:LEU115 4.9 9.5 1.0
C A:CYS114 4.9 8.1 1.0

Reference:

E.E.Kim, K.-H.Kim, J.H.Moon, K.Choi, H.K.Lee, H.S.Park. Structures of Actinonin Bound Peptide Deformylases From E. Faecalis and S. Pyogenes To Be Published.
Page generated: Fri Sep 25 08:12:42 2020
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