error » Nickel » PDB 2c21-2gw3 » 2pw8
error »
  Nickel »
    PDB 2c21-2gw3 »
      2pw8 »

Nickel in PDB 2pw8: Crystal Structure of Sulfo-Hirudin Complexed to Thrombin

Protein crystallography data

The structure of Crystal Structure of Sulfo-Hirudin Complexed to Thrombin, PDB code: 2pw8 was solved by C.C.Liu, E.Brustad, W.Liu, P.G.Schultz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.95 / 1.84
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 54.074, 103.567, 139.184, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 23.3

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Sulfo-Hirudin Complexed to Thrombin (pdb code 2pw8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Sulfo-Hirudin Complexed to Thrombin, PDB code: 2pw8:

Nickel binding site 1 out of 1 in 2pw8

Go back to Nickel Binding Sites List in 2pw8
Nickel binding site 1 out of 1 in the Crystal Structure of Sulfo-Hirudin Complexed to Thrombin


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Sulfo-Hirudin Complexed to Thrombin within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ni301

b:42.1
occ:1.00
OD2 L:ASP1A 1.9 37.5 1.0
O L:HOH303 2.0 46.2 1.0
NE2 H:HIS119 2.2 31.8 1.0
NZ L:LYS9 2.2 35.3 1.0
O L:HOH302 2.4 44.0 1.0
O L:HOH304 2.7 48.8 1.0
CG L:ASP1A 2.8 39.7 1.0
CD2 H:HIS119 3.0 28.9 1.0
OD1 L:ASP1A 3.1 39.8 1.0
CE L:LYS9 3.2 33.5 1.0
CE1 H:HIS119 3.3 29.2 1.0
O H:HOH440 4.0 44.5 1.0
O L:HOH315 4.2 60.0 1.0
CB L:ASP1A 4.2 39.2 1.0
CG H:HIS119 4.2 26.8 1.0
ND1 H:HIS119 4.3 31.4 1.0
O L:HOH318 4.5 52.8 1.0
CD L:LYS9 4.5 31.7 1.0
O L:HOH310 4.6 57.0 1.0
CD2 H:PHE114 4.7 27.7 1.0
O L:ASP1A 4.8 35.8 1.0

Reference:

C.C.Liu, E.Brustad, W.Liu, P.G.Schultz. Crystal Structure of A Biosynthetic Sulfo-Hirudin Complexed to Thrombin. J.Am.Chem.Soc. V. 129 10648 2007.
ISSN: ISSN 0002-7863
PubMed: 17685615
DOI: 10.1021/JA0735002
Page generated: Fri Sep 25 08:13:15 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy