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Nickel in PDB 2uu8: X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A)

Protein crystallography data

The structure of X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A), PDB code: 2uu8 was solved by H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.J.Cruickshank, J.A.Hubbard, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.23 / 0.94
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.867, 86.049, 61.539, 90.00, 90.00, 90.00
R / Rfree (%) 12 / 14.2

Other elements in 2uu8:

The structure of X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A) (pdb code 2uu8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A), PDB code: 2uu8:

Nickel binding site 1 out of 1 in 2uu8

Go back to Nickel Binding Sites List in 2uu8
Nickel binding site 1 out of 1 in the X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of X-Ray Structure of Ni, Ca Concanavalin A at Ultra-High Resolution (0. 94A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni239

b:5.5
occ:1.00
O A:HOH1051 2.0 8.3 1.0
NE2 A:HIS24 2.0 7.0 1.0
OD2 A:ASP10 2.1 7.2 1.0
OE2 A:GLU8 2.1 7.2 1.0
OD1 A:ASP19 2.1 8.1 1.0
O A:HOH1006 2.1 8.0 1.0
CE1 A:HIS24 3.0 7.3 1.0
CG A:ASP19 3.1 7.5 1.0
CD A:GLU8 3.1 7.2 1.0
CG A:ASP10 3.1 7.0 1.0
CD2 A:HIS24 3.1 7.3 1.0
OE1 A:GLU8 3.4 8.1 1.0
CB A:ASP10 3.5 7.3 1.0
OD2 A:ASP19 3.6 7.8 1.0
O A:HOH1045 3.6 16.1 0.4
O A:HOH1276 4.0 8.3 1.0
OG A:SER34 4.1 9.8 1.0
CA A:CA240 4.1 7.2 1.0
OD1 A:ASP10 4.2 7.6 1.0
ND1 A:HIS24 4.2 7.6 1.0
CB A:ASP19 4.2 8.4 1.0
CG A:HIS24 4.3 7.6 1.0
O A:HOH1020 4.3 10.7 0.6
CG A:GLU8 4.4 7.6 1.0
CA A:ASP19 4.6 9.2 1.0
O A:VAL32 4.7 11.4 1.0

Reference:

H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.J.Cruickshank, J.A.Hubbard, J.R.Helliwell. The Determination of Protonation States in Proteins. Acta Crystallogr.,Sect.D V. 63 906 2007.
ISSN: ISSN 0907-4449
PubMed: 17642517
DOI: 10.1107/S0907444907029976
Page generated: Thu Oct 29 06:18:08 2020
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