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Nickel in PDB 2v24: Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4

Protein crystallography data

The structure of Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4, PDB code: 2v24 was solved by J.Uppenberg, A.Bullock, T.Keates, P.Savitsky, A.C.W.Pike, E.Ugochukwu, G.Bunkoczi, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.Edwards, M.Sundstrom, S.Knapp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.220, 104.220, 40.780, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 26

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4 (pdb code 2v24). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4, PDB code: 2v24:

Nickel binding site 1 out of 1 in 2v24

Go back to Nickel Binding Sites List in 2v24
Nickel binding site 1 out of 1 in the Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Human Spry Domain-Containing Socs Box Protein Ssb-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1234

b:20.8
occ:1.00
ND1 A:HIS78 2.1 14.9 1.0
NE2 A:HIS76 2.2 16.1 1.0
ND1 A:HIS219 2.3 29.4 1.0
CE1 A:HIS78 2.7 42.2 1.0
CD2 A:HIS76 2.9 14.4 1.0
CE1 A:HIS219 3.2 23.0 1.0
CG A:HIS78 3.2 37.6 1.0
CG A:HIS219 3.3 24.9 1.0
CE1 A:HIS76 3.3 13.3 1.0
O A:ARG77 3.6 24.5 1.0
CB A:HIS219 3.6 19.6 1.0
CB A:HIS78 3.8 36.1 1.0
NE2 A:HIS78 3.9 50.1 1.0
CA A:HIS78 4.0 34.3 1.0
CD2 A:HIS78 4.2 50.4 1.0
CG A:HIS76 4.2 17.7 1.0
NE2 A:HIS219 4.3 26.1 1.0
ND1 A:HIS76 4.3 19.6 1.0
CD2 A:HIS219 4.4 26.7 1.0
C A:ARG77 4.4 27.5 1.0
CA A:HIS219 4.6 20.7 1.0
N A:HIS78 4.6 26.6 1.0
CD A:PRO79 4.9 29.9 1.0

Reference:

P.Filippakopoulos, A.Low, T.D.Sharpe, J.Uppenberg, S.Yao, Z.Kuang, P.Savitsky, R.S.Lewis, S.E.Nicholson, R.S.Norton, A.Bullock. Structural Basis For Par-4 Recognition By the Spry Domain- and Socs Box-Containing Proteins SPSB1, SPSB2, and SPSB4. J.Mol.Biol. V. 401 389 2010.
ISSN: ISSN 0022-2836
PubMed: 20561531
DOI: 10.1016/J.JMB.2010.06.017
Page generated: Fri Sep 25 08:15:06 2020
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