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Nickel in PDB 2vbq: Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine.

Enzymatic activity of Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine.

All present enzymatic activity of Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine.:
2.3.1.82;

Protein crystallography data

The structure of Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine., PDB code: 2vbq was solved by M.W.Vetting, M.L.Magalhaes, L.Freiburger, F.Gao, K.Auclair, J.S.Blanchard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.05 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.964, 44.599, 88.387, 90.00, 93.92, 90.00
R / Rfree (%) 18.1 / 23

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine. (pdb code 2vbq). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine., PDB code: 2vbq:

Nickel binding site 1 out of 1 in 2vbq

Go back to Nickel Binding Sites List in 2vbq
Nickel binding site 1 out of 1 in the Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Aac(6')-Iy in Complex with Bisubstrate Analog Coa-S- Monomethyl-Acetylneamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1001

b:14.1
occ:1.00
 NE2 A:HIS0 1.9 11.7 1.0
OD1 A:ASP2 2.0 12.3 1.0
CG A:ASP2 2.8 15.1 1.0
CE1 A:HIS0 2.9 10.4 1.0
OD2 A:ASP2 2.9 9.4 1.0
CD2 A:HIS0 3.0 10.9 1.0
ND1 A:HIS0 4.0 9.7 1.0
CG A:HIS0 4.1 13.3 1.0
CB A:ASP2 4.1 12.7 1.0
O A:MET1 4.2 14.1 1.0
CA A:ASP2 4.6 14.0 1.0
O A:HOH2003 4.6 29.0 1.0
O A:HOH2007 4.8 44.0 1.0
C A:MET1 4.9 14.9 1.0
N A:ASP2 5.0 13.8 1.0

Reference:

M.L.Magalhaes, M.W.Vetting, F.Gao, L.Freiburger, K.Auclair, J.S.Blanchard. Kinetic and Structural Analysis of Bisubstrate Inhibition of the Salmonella Enterica Aminoglycoside 6'-N-Acetyltransferase. Biochemistry V. 47 579 2008.
ISSN: ISSN 0006-2960
PubMed: 18095712
DOI: 10.1021/BI701957C
Page generated: Wed Dec 16 01:19:55 2020

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