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Nickel in PDB 2w37: Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii

Enzymatic activity of Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii

All present enzymatic activity of Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii:
2.1.3.3;

Protein crystallography data

The structure of Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii, PDB code: 2w37 was solved by B.De Las Rivas, G.C.Fox, I.Angulo, H.Rodriguez, R.Munoz, J.M.Mancheno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.34 / 2.10
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 156.805, 156.805, 80.623, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 24.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii (pdb code 2w37). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii, PDB code: 2w37:

Nickel binding site 1 out of 1 in 2w37

Go back to Nickel Binding Sites List in 2w37
Nickel binding site 1 out of 1 in the Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1344

b:23.5
occ:1.00
 O B:HOH2048 2.1 23.5 1.0
NE2 A:HIS79 2.2 19.0 1.0
O C:HOH2034 2.2 27.0 1.0
NE2 C:HIS79 2.2 18.3 1.0
O A:HOH2058 2.2 16.0 1.0
NE2 B:HIS79 2.2 24.1 1.0
CE1 A:HIS79 3.1 17.6 1.0
CD2 C:HIS79 3.2 18.9 1.0
CE1 B:HIS79 3.2 23.7 1.0
CD2 A:HIS79 3.2 16.5 1.0
CE1 C:HIS79 3.2 19.0 1.0
CD2 B:HIS79 3.2 20.8 1.0
OE1 A:GLU81 4.0 30.2 1.0
OE1 B:GLU81 4.1 35.3 1.0
O C:PRO80 4.2 24.4 1.0
ND1 A:HIS79 4.2 17.8 1.0
OE1 C:GLU81 4.2 33.8 1.0
O A:PRO80 4.3 22.9 1.0
ND1 C:HIS79 4.3 19.9 1.0
O B:PRO80 4.3 24.1 1.0
CG A:HIS79 4.3 18.3 1.0
CG C:HIS79 4.3 20.5 1.0
ND1 B:HIS79 4.3 21.8 1.0
CG B:HIS79 4.4 21.6 1.0

Reference:

B.De Las Rivas, G.C.Fox, I.Angulo, M.M.Ripoll, H.Rodriguez, R.Munoz, J.M.Mancheno. Crystal Structure of the Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii: Structural Insights Into the Oligomeric Assembly and Metal Binding. J.Mol.Biol. V. 393 425 2009.
ISSN: ISSN 0022-2836
PubMed: 19666033
DOI: 10.1016/J.JMB.2009.08.002
Page generated: Wed Oct 9 17:00:36 2024

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