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Nickel in PDB 2wcr: Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8

Protein crystallography data

The structure of Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8, PDB code: 2wcr was solved by T.Tosi, G.Cioci, K.Jouravleva, C.Dian, L.Terradot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.38 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.880, 67.260, 97.470, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8 (pdb code 2wcr). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8, PDB code: 2wcr:

Nickel binding site 1 out of 1 in 2wcr

Go back to Nickel Binding Sites List in 2wcr
Nickel binding site 1 out of 1 in the Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Tip-Alpha N34 (HP0596) From Helicobacter Pylori at PH8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni400

b:22.1
occ:1.00
NE2 A:HIS157 2.0 9.3 1.0
N3 A:IMD300 2.2 27.0 1.0
C2 A:IMD300 2.9 27.9 1.0
CD2 A:HIS157 3.0 10.9 1.0
CE1 A:HIS157 3.0 10.5 1.0
C4 A:IMD300 3.4 33.2 1.0
ND1 A:HIS157 4.1 14.3 1.0
CG A:HIS157 4.1 12.3 1.0
N1 A:IMD300 4.2 30.1 1.0
C5 A:IMD300 4.4 31.4 1.0

Reference:

T.Tosi, G.Cioci, K.Jouravleva, C.Dian, L.Terradot. Structures of the Tumor Necrosis Factor Alpha Inducing Protein Tipalpha: A Novel Virulence Factor From Helicobacter Pylori. Febs Lett. V. 583 1581 2009.
ISSN: ISSN 0014-5793
PubMed: 19401200
DOI: 10.1016/J.FEBSLET.2009.04.033
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