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Nickel in PDB 2wny: Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus

Protein crystallography data

The structure of Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus, PDB code: 2wny was solved by C.L.Ng, D.G.Waterman, A.A.Lebedev, C.Smits, M.Ortiz-Lombardia, A.A.Antson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.23 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.576, 61.021, 88.311, 90.00, 90.00, 90.00
R / Rfree (%) 19.104 / 24.705

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus (pdb code 2wny). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus, PDB code: 2wny:

Nickel binding site 1 out of 1 in 2wny

Go back to Nickel Binding Sites List in 2wny
Nickel binding site 1 out of 1 in the Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1138

b:29.6
occ:1.00
NE2 A:HIS45 2.0 39.3 1.0
CD2 A:HIS45 2.9 38.5 1.0
CE1 A:HIS45 3.0 43.8 1.0
OH A:TYR44 3.8 48.0 1.0
CG A:HIS45 4.1 34.3 1.0
ND1 A:HIS45 4.1 37.8 1.0
CZ A:TYR44 4.1 40.7 1.0
CE1 A:TYR44 4.5 44.0 1.0
CE2 A:TYR44 4.7 38.1 1.0

Reference:

C.L.Ng, D.G.Waterman, A.A.Lebedev, C.Smits, M.Ortiz-Lombardia, A.A.Antson. Structure of MTH689, A DUF54 Protein From Methanothermobacter Thermautotrophicus To Be Published.
Page generated: Fri Sep 25 08:16:14 2020
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