Nickel in PDB 2wvf: Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function

The structure of Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function, PDB code: 2wvf was solved by C.Dian, C.Bahlawane, C.Muller, A.Round, C.Delay, C.Fauquant, K.Schauer, H.De Reuse, I.Michaud-Soret, L.Terradot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.081 / 1.60
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	70.534, 70.534, 226.188, 90.00, 90.00, 120.00
R / Rfree (%)	18.47 / 19.95

The binding sites of Nickel atom in the Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function (pdb code 2wvf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function, PDB code: 2wvf:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1143 b:29.0 occ:0.31 NE2 A:HIS101 2.3 43.2 1.0 O A:HOH2058 2.4 44.3 0.7 CE1 A:HIS101 2.9 43.4 1.0 CD2 A:HIS101 3.5 39.5 1.0 ND1 A:HIS101 4.1 41.7 1.0 CG A:HIS101 4.4 37.3 1.0

Nickel binding site 2 out of 2 in the Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Function within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni1148 b:17.2 occ:1.00 ND1 B:HIS101 2.0 17.3 1.0 NE2 B:HIS99 2.1 16.9 1.0 SG B:CYS107 2.2 17.6 1.0 CE1 B:HIS101 3.0 18.9 1.0 CE1 B:HIS99 3.0 18.6 1.0 CG B:HIS101 3.1 17.6 1.0 CD2 B:HIS99 3.1 15.5 1.0 CB B:CYS107 3.3 15.5 1.0 CB B:HIS101 3.4 19.0 1.0 CA B:HIS101 3.4 16.6 1.0 N B:HIS101 4.0 17.1 1.0 NE2 B:HIS101 4.1 18.9 1.0 ND1 B:HIS99 4.1 17.4 1.0 CA B:CYS107 4.1 16.7 1.0 O B:ILE100 4.2 16.6 1.0 CD2 B:HIS101 4.2 18.6 1.0 CG B:HIS99 4.2 15.5 1.0 C B:ILE100 4.4 18.0 1.0 O B:ASN106 4.7 21.6 1.0 C B:HIS101 4.8 19.8 1.0 N B:CYS107 4.9 16.7 1.0

C.Bahlawane, C.Dian, C.Muller, A.Round, C.Fauquant, K.Schauer, H.De Reuse, L.Terradot, I.Michaud-Soret. Structural and Mechanistic Insights Into Helicobacter Pylori Nikr Activation. Nucleic Acids Res. V. 38 3106 2010.
ISSN: ISSN 0305-1048
PubMed: 20089510
DOI: 10.1093/NAR/GKP1216